Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC008065.1-201ENST00000428525 348 ntBASIC3.92□□□□□ -1.78
SDC3O75056 MTCO1P54-201ENST00000430139 712 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.92□□□□□ -1.78
SDC3O75056 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 AP000949.1-201ENST00000438328 629 ntBASIC3.92□□□□□ -1.78
SDC3O75056 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.92□□□□□ -1.78
SDC3O75056 RPL7P55-201ENST00000450522 746 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.92□□□□□ -1.78
SDC3O75056 AC008494.2-201ENST00000514544 370 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.92□□□□□ -1.78
SDC3O75056 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.92□□□□□ -1.78
SDC3O75056 AC010306.1-201ENST00000523223 1117 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AP000916.1-201ENST00000533869 835 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.92□□□□□ -1.78
SDC3O75056 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.92□□□□□ -1.78
SDC3O75056 AC027104.1-201ENST00000563702 681 ntBASIC3.92□□□□□ -1.78
SDC3O75056 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.92□□□□□ -1.78
SDC3O75056 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.92□□□□□ -1.78
SDC3O75056 AC124283.4-201ENST00000581815 456 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC125494.3-201ENST00000602759 455 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC098483.2-201ENST00000603158 454 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC083899.3-201ENST00000603413 594 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC113194.1-201ENST00000606037 500 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AL158211.2-201ENST00000607282 395 ntBASIC3.92□□□□□ -1.78
SDC3O75056 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 RMST_10.1-201ENST00000616309 154 ntBASIC3.92□□□□□ -1.78
SDC3O75056 STMN1P1-201ENST00000617809 440 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC024595.1-201ENST00000623088 387 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AL590396.2-201ENST00000636511 1041 ntBASIC3.92□□□□□ -1.78
SDC3O75056 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
SDC3O75056 AL031985.3-201ENST00000565390 2449 ntBASIC3.92□□□□□ -1.78
SDC3O75056 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SDC3O75056 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC3O75056 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.91□□□□□ -1.78
SDC3O75056 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.91□□□□□ -1.78
SDC3O75056 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SDC3O75056 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SDC3O75056 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SDC3O75056 RNU1-15P-201ENST00000353977 144 ntBASIC3.91□□□□□ -1.78
SDC3O75056 RNU6-543P-201ENST00000362576 108 ntBASIC3.91□□□□□ -1.78
SDC3O75056 SNORD46.1-201ENST00000364139 104 ntBASIC3.91□□□□□ -1.78
SDC3O75056 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SDC3O75056 RNU6-761P-201ENST00000384148 107 ntBASIC3.91□□□□□ -1.78
SDC3O75056 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SDC3O75056 ATF1P1-201ENST00000406040 927 ntBASIC3.91□□□□□ -1.78
SDC3O75056 VN1R8P-201ENST00000407739 893 ntBASIC3.91□□□□□ -1.78
SDC3O75056 SNORA11.1-201ENST00000408133 129 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC093578.1-201ENST00000415219 368 ntBASIC3.91□□□□□ -1.78
SDC3O75056 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.91□□□□□ -1.78
SDC3O75056 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC3O75056 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.91□□□□□ -1.78
SDC3O75056 FTH1P6-201ENST00000430768 320 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AL512637.2-201ENST00000431287 1256 ntBASIC3.91□□□□□ -1.78
SDC3O75056 MTCO1P43-201ENST00000431831 488 ntBASIC3.91□□□□□ -1.78
SDC3O75056 PRELID3BP10-201ENST00000431957 584 ntBASIC3.91□□□□□ -1.78
SDC3O75056 HLA-N-201ENST00000437516 135 ntBASIC3.91□□□□□ -1.78
SDC3O75056 RPL7P28-201ENST00000437739 740 ntBASIC3.91□□□□□ -1.78
SDC3O75056 RPL6P5-201ENST00000445678 828 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC068135.1-201ENST00000446164 246 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 AL645939.1-201ENST00000453429 797 ntBASIC3.91□□□□□ -1.78
SDC3O75056 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 AP000926.1-201ENST00000479573 241 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC012170.1-201ENST00000495139 359 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.91□□□□□ -1.78
SDC3O75056 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 AC008565.1-201ENST00000509046 885 ntBASIC3.91□□□□□ -1.78
SDC3O75056 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 CYP4A43P-201ENST00000568156 121 ntBASIC3.91□□□□□ -1.78
SDC3O75056 MIR3944-201ENST00000581277 108 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC090312.2-201ENST00000582687 378 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 AC015911.5-201ENST00000587076 451 ntBASIC3.91□□□□□ -1.78
SDC3O75056 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.91□□□□□ -1.78
SDC3O75056 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
SDC3O75056 MIR432-201ENST00000606207 94 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC069200.1-201ENST00000609511 323 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AC245100.7-201ENST00000609678 442 ntBASIC3.91□□□□□ -1.78
SDC3O75056 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.91□□□□□ -1.78
SDC3O75056 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.91□□□□□ -1.78
SDC3O75056 MIR6864-201ENST00000617935 70 ntBASIC3.91□□□□□ -1.78
SDC3O75056 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.91□□□□□ -1.78
SDC3O75056 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
SDC3O75056 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
SDC3O75056 AC025125.1-201ENST00000624743 1922 ntBASIC3.91□□□□□ -1.78
SDC3O75056 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms