Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 EIF2AP4-201ENST00000424793 1781 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 NACA3P-201ENST00000359690 648 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 SNORD116.1-201ENST00000365628 92 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 RNU6-1279P-201ENST00000383917 103 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AL590290.1-201ENST00000405336 380 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC027644.1-201ENST00000419595 298 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AL031663.1-201ENST00000437445 219 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 RPL23AP52-201ENST00000439311 478 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 RPL23AP89-201ENST00000439324 255 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 CBX1P4-201ENST00000439415 457 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 UBE2V1P5-201ENST00000440070 405 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 NDUFS5P3-201ENST00000450668 321 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 RPL23AP12-201ENST00000467573 473 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC011276.1-201ENST00000469688 323 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC083829.1-201ENST00000503756 657 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 RNU6-416P-201ENST00000516265 103 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC023632.1-201ENST00000518463 375 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 RAB9BP1-201ENST00000519581 626 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC009643.1-201ENST00000532030 391 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC068714.1-201ENST00000559623 800 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC010200.2-201ENST00000605098 235 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 MIR6748-201ENST00000610433 71 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AL136295.6-201ENST00000610486 658 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC067931.1-201ENST00000624190 671 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 MTCO1P6-201ENST00000481192 1384 ntBASIC4.38□□□□□ -1.71
PCDH9Q9HC56 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDH9Q9HC56 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 RNA5SP509-201ENST00000364577 119 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 OR1L1-202ENST00000373686 1083 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 OR52E6-202ENST00000379946 954 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 RNU6-413P-201ENST00000384115 107 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AL079342.2-201ENST00000403367 482 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AL590084.1-201ENST00000407885 387 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 RPF2P1-201ENST00000424137 906 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 RWDD4P2-201ENST00000426392 563 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 FGF7P5-201ENST00000441829 291 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC233982.1-201ENST00000451247 436 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 NECAP1P2-201ENST00000455668 727 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC004263.1-201ENST00000479327 332 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 IGBP1P5-201ENST00000507524 1000 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC113347.3-201ENST00000509113 148 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC093840.1-201ENST00000511599 336 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 SNORA3.4-201ENST00000515969 96 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 IGJP1-201ENST00000522682 475 ntBASIC4.37□□□□□ -1.71
PCDH9Q9HC56 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.37□□□□□ -1.71
PCDH9Q9HC56 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms