Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AL606834.3-201ENST00000602615 496 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 AL390816.3-201ENST00000604527 1066 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 AC073387.2-201ENST00000604797 784 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 AP000238.1-201ENST00000608759 426 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 AC105227.2-201ENST00000615075 605 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 MIR4278-201ENST00000636094 69 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 AC068620.4-201ENST00000636730 1182 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 AL445984.1-201ENST00000637834 659 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.79□□□□□ -1.8
SSX3Q99909 AC108467.2-201ENST00000617640 1597 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.79□□□□□ -1.8
SSX3Q99909 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SSX3Q99909 NOL8P1-201ENST00000508336 3529 ntBASIC3.79□□□□□ -1.8
SSX3Q99909 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.79□□□□□ -1.8
SSX3Q99909 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.79□□□□□ -1.8
SSX3Q99909 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
SSX3Q99909 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX3Q99909 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX3Q99909 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
SSX3Q99909 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX3Q99909 OR56B2P-201ENST00000317102 954 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 ANKRD36P1-201ENST00000344424 659 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 RNU6-619P-201ENST00000365146 108 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX3Q99909 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SSX3Q99909 RNA5SP332-201ENST00000391063 115 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 SSXP10-201ENST00000402595 565 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AL049697.2-201ENST00000403708 294 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 FAR2P2-201ENST00000413041 594 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.78□□□□□ -1.8
SSX3Q99909 AC008280.1-201ENST00000418851 412 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 RPS27AP12-201ENST00000429552 465 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AC004938.1-201ENST00000438468 308 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 PTGES3P1-201ENST00000439531 483 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 RPL7P59-201ENST00000447700 943 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 ZFRP1-201ENST00000457579 2970 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX3Q99909 snoU13.1-201ENST00000459157 104 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AC090142.1-201ENST00000465776 462 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AC104763.1-201ENST00000475274 360 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 RN7SL481P-201ENST00000477764 299 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.78□□□□□ -1.8
SSX3Q99909 AP001086.1-201ENST00000494882 321 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
SSX3Q99909 AC119751.4-201ENST00000507498 357 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AC111000.3-201ENST00000508057 576 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.78□□□□□ -1.8
SSX3Q99909 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SSX3Q99909 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.78□□□□□ -1.8
SSX3Q99909 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC3.78□□□□□ -1.8
SSX3Q99909 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX3Q99909 SNRPGP15-201ENST00000600149 222 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AL022067.1-201ENST00000602426 454 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.78□□□□□ -1.8
SSX3Q99909 AC019193.2-201ENST00000610012 634 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
SSX3Q99909 MIR7641-1-201ENST00000627518 61 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX3Q99909 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX3Q99909 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX3Q99909 AL355852.1-201ENST00000454081 1771 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 AC006971.1-201ENST00000407916 4486 ntBASIC3.78□□□□□ -1.8
SSX3Q99909 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX3Q99909 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX3Q99909 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.78□□□□□ -1.81
SSX3Q99909 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SSX3Q99909 Z82217.1-201ENST00000625157 8149 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 AL359893.1-201ENST00000447628 1580 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
SSX3Q99909 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SSX3Q99909 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SSX3Q99909 SNORA31-201ENST00000362607 130 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 SNORD113.2-201ENST00000364166 89 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.77□□□□□ -1.81
SSX3Q99909 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SSX3Q99909 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.77□□□□□ -1.81
SSX3Q99909 SNORA70F-201ENST00000384142 135 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 RNU6-1226P-201ENST00000384317 107 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 AL590762.2-201ENST00000395798 571 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 RNU2-37P-201ENST00000410695 177 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 RNU6-575P-201ENST00000411326 105 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 MTND2P16-201ENST00000419987 799 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC3.77□□□□□ -1.81
SSX3Q99909 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 CENPIP1-201ENST00000425713 902 ntBASIC3.77□□□□□ -1.81
SSX3Q99909 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms