Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 NMD3P1-201ENST00000439704 1488 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 RPL21P40-201ENST00000428586 483 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 BTG4P1-201ENST00000510421 183 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 DEFB122-202ENST00000569013 197 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AC138761.3-201ENST00000579993 334 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 BRDTP1-201ENST00000605735 677 ntBASIC3.12□□□□□ -1.91
VPS13AQ96RL7 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS13AQ96RL7 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 MIR9-1-201ENST00000385198 89 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 UBL5P3-201ENST00000475112 231 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 uc_338.25-201ENST00000613756 156 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AL513302.2-201ENST00000562313 1842 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AL049780.3-201ENST00000624612 1583 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 NAMPTP1-201ENST00000440465 2514 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 NECAP1P2-201ENST00000455668 727 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 RPS3P1-201ENST00000456781 192 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AC109329.2-201ENST00000519658 482 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AP000873.5-201ENST00000533906 236 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AC008079.2-201ENST00000623543 20396 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AL078595.2-201ENST00000605309 1780 ntBASIC3.11□□□□□ -1.91
VPS13AQ96RL7 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS13AQ96RL7 SEPT7P2-202ENST00000398921 823 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 IGKV3-31-201ENST00000523109 329 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AC009097.3-201ENST00000563557 1018 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AL162713.1-201ENST00000604480 262 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AC026979.4-201ENST00000606555 645 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AC025754.2-201ENST00000606491 432 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AL353600.1-201ENST00000608148 251 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AL359535.1-201ENST00000612100 1087 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AL592295.2-201ENST00000612578 206 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 MTCO1P9-201ENST00000505577 1534 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 TCP1P3-201ENST00000414406 1498 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 MIR22-201ENST00000362190 85 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AC008264.1-201ENST00000447612 367 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 AC034159.1-201ENST00000513885 583 ntBASIC3.1□□□□□ -1.91
VPS13AQ96RL7 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS13AQ96RL7 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 AL356057.1-202ENST00000402263 756 ntBASIC3.09□□□□□ -1.91
VPS13AQ96RL7 RAP1BP1-201ENST00000412709 553 ntBASIC3.09□□□□□ -1.91
VPS13AQ96RL7 AC063976.3-201ENST00000426849 329 ntBASIC3.09□□□□□ -1.91
VPS13AQ96RL7 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 AC008549.1-201ENST00000512900 643 ntBASIC3.09□□□□□ -1.91
VPS13AQ96RL7 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 AP000926.4-201ENST00000527351 454 ntBASIC3.09□□□□□ -1.91
VPS13AQ96RL7 LINC01355-201ENST00000566551 5444 ntBASIC3.09□□□□□ -1.91
VPS13AQ96RL7 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.91
VPS13AQ96RL7 AL022311.1-201ENST00000623726 19416 ntBASIC3.09□□□□□ -1.91
VPS13AQ96RL7 AC083843.3-201ENST00000623679 2186 ntBASIC3.09□□□□□ -1.92
VPS13AQ96RL7 FAM133CP-201ENST00000332869 704 ntBASIC3.09□□□□□ -1.92
VPS13AQ96RL7 RNU6-851P-201ENST00000384565 107 ntBASIC3.09□□□□□ -1.92
VPS13AQ96RL7 RN7SKP220-201ENST00000410611 288 ntBASIC3.09□□□□□ -1.92
VPS13AQ96RL7 RNA5SP184-201ENST00000411071 108 ntBASIC3.09□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms