Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC100770.1-201ENST00000532310 322 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC079148.1-201ENST00000565944 819 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC106734.1-201ENST00000568646 663 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC120057.2-201ENST00000571520 271 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 MIR4504-201ENST00000577413 92 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 VN1R79P-201ENST00000593540 513 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AL445493.3-201ENST00000619568 477 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 MIR6500-201ENST00000622700 86 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC011978.2-201ENST00000569835 2054 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 AC107081.3-201ENST00000612715 2034 ntBASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HDDC3Q8N4P3 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.15□□□□□ -1.74
HDDC3Q8N4P3 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HDDC3Q8N4P3 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
HDDC3Q8N4P3 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
HDDC3Q8N4P3 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HDDC3Q8N4P3 CASC19-261ENST00000641853 1638 ntBASIC4.15□□□□□ -1.74
HDDC3Q8N4P3 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 RNU6-792P-201ENST00000363490 107 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 MIR3074-201ENST00000384885 81 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 DSTNP4-201ENST00000399472 474 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 TPT1P2-201ENST00000413105 503 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 EIF4EP1-201ENST00000422311 642 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AC115285.1-201ENST00000424879 736 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AC073335.1-201ENST00000427776 363 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AL513175.1-201ENST00000431492 780 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 YWHAZP8-201ENST00000436935 731 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AC006011.1-201ENST00000442758 349 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 RPL7P55-201ENST00000450522 746 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 PRSS3P4-201ENST00000453323 162 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AC015724.1-201ENST00000478577 156 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 RNU4-60P-201ENST00000517239 135 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AC087272.1-201ENST00000523624 533 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 YWHAQP7-201ENST00000603536 658 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 AC008432.1-201ENST00000615912 1320 ntBASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HDDC3Q8N4P3 MTND4P8-201ENST00000514997 1362 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AC016588.2-201ENST00000632484 3021 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 RNA5SP502-201ENST00000362694 119 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 SNORD56.4-201ENST00000363883 71 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 MIR483-201ENST00000385070 76 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AL355379.1-201ENST00000405542 640 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 RNU4-6P-201ENST00000410804 122 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 HSPE1P12-201ENST00000412576 301 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 UBE2V1P1-201ENST00000430836 445 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 RPL21P110-201ENST00000433345 446 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 MTND1P33-201ENST00000446251 917 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 RPL7P1-201ENST00000468161 747 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 RPL7P9-201ENST00000468715 747 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 BNIP3P41-201ENST00000503774 571 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AC008694.2-201ENST00000517591 306 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 IGHV3-32-201ENST00000519182 355 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 TRMT10BP1-201ENST00000519377 943 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AF279873.1-201ENST00000523393 313 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 OR8K2P-201ENST00000524645 927 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 CBX3P5-201ENST00000552017 521 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms