Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC58Q4VC31 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC58Q4VC31 AC023161.2-201ENST00000551218 780 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 MIR4474-201ENST00000579189 78 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 MAGOH2P-202ENST00000584384 429 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC58Q4VC31 AC068790.4-201ENST00000602474 263 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 AC006077.1-201ENST00000604746 343 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 RNA5SP108-201ENST00000605921 117 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 AC105105.5-201ENST00000622635 1294 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 AP003072.4-201ENST00000624580 310 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 AC008264.2-201ENST00000610193 3731 ntBASIC3.18□□□□□ -1.9
CCDC58Q4VC31 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC58Q4VC31 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC58Q4VC31 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 SOD2P1-201ENST00000396543 562 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 MIR887-201ENST00000401258 79 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 HMGB3P18-201ENST00000406327 590 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 HMGB3P23-201ENST00000414981 585 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 RAB9AP4-201ENST00000415230 609 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC245291.1-201ENST00000419501 328 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 SETP8-201ENST00000435341 628 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AL645931.1-201ENST00000439737 410 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AL357552.1-201ENST00000445254 415 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC069277.2-201ENST00000454211 432 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 UBDP1-202ENST00000457888 382 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 RPL21P18-201ENST00000469899 480 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 RN7SL594P-201ENST00000470590 287 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 RPS4XP13-201ENST00000483219 789 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 SETP14-201ENST00000497538 873 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 HMGB1P21-201ENST00000502313 581 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 SCARNA14-201ENST00000516903 136 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC026333.2-201ENST00000542164 106 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC004024.1-201ENST00000549244 247 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 DUXAP6-201ENST00000553858 601 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC025884.1-201ENST00000556034 378 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 MIR4284-201ENST00000578924 81 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 VN1R81P-201ENST00000602085 372 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AL590240.3-201ENST00000621416 943 ntBASIC3.17□□□□□ -1.9
CCDC58Q4VC31 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC58Q4VC31 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 MFSD8-233ENST00000641482 4860 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 ST13P16-201ENST00000401760 781 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 RPL31P2-201ENST00000413849 377 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AL591419.1-201ENST00000427423 339 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AL353898.1-201ENST00000444055 238 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 GAPDHP27-201ENST00000447427 1020 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC093267.1-201ENST00000489176 961 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 SNORA31.9-201ENST00000516429 84 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 SNORA64.4-201ENST00000516632 81 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 SNORA70.19-201ENST00000516717 90 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 MTCO3P24-201ENST00000572729 782 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 MIR5187-201ENST00000583479 76 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 RNU1-30P-201ENST00000606575 163 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AP003355.3-201ENST00000623465 114 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC58Q4VC31 AC073342.3-201ENST00000624211 193 ntBASIC3.16□□□□□ -1.9
CCDC58Q4VC31 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms