Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AL158071.1-201ENST00000430315 461 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 MTND2P2-201ENST00000434633 945 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 AC044797.1-201ENST00000445744 679 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXF1Q12946 PDSS1P2-201ENST00000449397 678 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 RBMY2UP-201ENST00000453474 324 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXF1Q12946 BLNK-209ENST00000495266 440 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 RPL7P47-201ENST00000497299 556 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 AC006499.5-201ENST00000505037 514 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 AC110768.1-201ENST00000509222 400 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 SNORA70.19-201ENST00000516717 90 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 SOD1P3-201ENST00000518682 454 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 AC109635.6-201ENST00000525487 1113 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXF1Q12946 AC067852.3-201ENST00000589177 561 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXF1Q12946 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 AC007529.1-201ENST00000418574 2178 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXF1Q12946 AC032011.1-201ENST00000611703 1549 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 EXOC5P1-201ENST00000510543 1969 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 AL513302.2-201ENST00000562313 1842 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXF1Q12946 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXF1Q12946 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXF1Q12946 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXF1Q12946 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
FOXF1Q12946 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXF1Q12946 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
FOXF1Q12946 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
FOXF1Q12946 MIR449B-201ENST00000384995 97 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 MIR670-201ENST00000390142 98 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 SNORA48.7-201ENST00000391302 135 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 RSL24D1P1-201ENST00000404972 493 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 HMGB3P18-201ENST00000406327 590 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 RN7SKP285-201ENST00000410137 318 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 Z99755.1-201ENST00000414048 380 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 BX842559.1-201ENST00000419615 532 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 AC022022.1-201ENST00000430304 178 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXF1Q12946 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXF1Q12946 RPL26P28-201ENST00000451325 435 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 MRPS31P2-201ENST00000451581 518 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 AC007967.1-201ENST00000455422 1159 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 RPL21P129-201ENST00000491732 478 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXF1Q12946 AC007458.1-201ENST00000542812 373 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXF1Q12946 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXF1Q12946 AC115989.2-201ENST00000578640 563 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 AC010615.3-201ENST00000597319 394 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 AC092354.2-201ENST00000607786 514 ntBASIC3.11□□□□□ -1.91
FOXF1Q12946 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXF1Q12946 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXF1Q12946 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXF1Q12946 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXF1Q12946 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
FOXF1Q12946 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXF1Q12946 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXF1Q12946 AC066616.2-201ENST00000559334 1481 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXF1Q12946 AC058791.1-201ENST00000608412 3198 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 RAD1P1-201ENST00000231383 813 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXF1Q12946 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXF1Q12946 SNORA11-201ENST00000408789 128 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 RNU2-65P-201ENST00000410162 185 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 RPL21P110-201ENST00000433345 446 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXF1Q12946 RPS15AP29-201ENST00000445539 400 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 CASP3P1-201ENST00000446037 609 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 VN1R34P-201ENST00000447387 883 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 METTL15P1-201ENST00000481421 1045 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 PCBP2P3-201ENST00000509726 843 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 RNU4-18P-201ENST00000516751 149 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 AC022616.2-201ENST00000523185 300 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 OR4C2P-201ENST00000530855 1064 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXF1Q12946 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXF1Q12946 AC006557.5-201ENST00000603126 811 ntBASIC3.1□□□□□ -1.91
FOXF1Q12946 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXF1Q12946 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXF1Q12946 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXF1Q12946 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
FOXF1Q12946 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXF1Q12946 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXF1Q12946 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.1□□□□□ -1.91
FOXF1Q12946 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
FOXF1Q12946 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
FOXF1Q12946 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXF1Q12946 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
FOXF1Q12946 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXF1Q12946 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms