Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 SNORA62.2-201ENST00000364672 152 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 ZNF602P-201ENST00000405929 924 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 AC069218.2-201ENST00000411665 344 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 VN1R51P-201ENST00000411675 945 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.12□□□□□ -1.91
CHD3Q12873 RPS29P4-201ENST00000414733 161 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 AL645939.1-201ENST00000453429 797 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 SNORA70.14-201ENST00000516205 110 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 SNORA70.17-201ENST00000516449 133 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 snoU109.6-201ENST00000516831 118 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 AC091515.1-201ENST00000548110 679 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 AC090877.1-201ENST00000561418 344 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.12□□□□□ -1.91
CHD3Q12873 AC132825.8-201ENST00000640783 297 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CHD3Q12873 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.12□□□□□ -1.91
CHD3Q12873 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC3.12□□□□□ -1.91
CHD3Q12873 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHD3Q12873 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHD3Q12873 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHD3Q12873 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CHD3Q12873 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.12□□□□□ -1.91
CHD3Q12873 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CHD3Q12873 RNA5SP197-201ENST00000363357 119 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.12□□□□□ -1.91
CHD3Q12873 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 ATP5A1P2-201ENST00000412323 255 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 RPL31P12-201ENST00000422587 358 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.12□□□□□ -1.91
CHD3Q12873 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.12□□□□□ -1.91
CHD3Q12873 RPL5P24-201ENST00000463742 885 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 RN7SL330P-201ENST00000469709 307 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 AC093663.1-201ENST00000497190 394 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 AC068446.3-201ENST00000555285 382 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHD3Q12873 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.12□□□□□ -1.91
CHD3Q12873 AC009303.3-201ENST00000591103 736 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 AL713922.2-201ENST00000619384 716 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 U4.6-201ENST00000621618 127 ntBASIC3.12□□□□□ -1.91
CHD3Q12873 BANCR-201ENST00000624238 473 ntTSL 2 BASIC3.12□□□□□ -1.91
CHD3Q12873 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
CHD3Q12873 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.12□□□□□ -1.91
CHD3Q12873 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CHD3Q12873 MTCO1P14-201ENST00000441695 1559 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 AC007823.1-201ENST00000569932 1566 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.11□□□□□ -1.91
CHD3Q12873 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CHD3Q12873 RPL23AP57-201ENST00000332361 466 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 RPL7P60-201ENST00000397636 735 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 AC096644.3-201ENST00000416788 338 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 MTCO1P45-201ENST00000431457 267 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 AL136097.1-201ENST00000456945 913 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 AC010307.1-201ENST00000467206 836 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 RN7SL807P-201ENST00000470923 297 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.11□□□□□ -1.91
CHD3Q12873 RPL32P34-201ENST00000486380 400 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.11□□□□□ -1.91
CHD3Q12873 AC026784.1-201ENST00000507986 352 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 USP9YP5-201ENST00000511770 630 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.11□□□□□ -1.91
CHD3Q12873 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.11□□□□□ -1.91
CHD3Q12873 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.11□□□□□ -1.91
CHD3Q12873 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.11□□□□□ -1.91
CHD3Q12873 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC3.11□□□□□ -1.91
CHD3Q12873 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.11□□□□□ -1.91
CHD3Q12873 AC110801.1-201ENST00000623590 212 ntBASIC3.11□□□□□ -1.91
CHD3Q12873 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
CHD3Q12873 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.11□□□□□ -1.91
CHD3Q12873 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CHD3Q12873 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CHD3Q12873 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CHD3Q12873 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CHD3Q12873 RNU4-35P-201ENST00000362588 141 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 RNA5SP50-201ENST00000363731 107 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 OR6K3-202ENST00000368146 996 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC3.1□□□□□ -1.91
CHD3Q12873 RPL7P44-201ENST00000424827 742 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AL035458.1-201ENST00000433096 585 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.1□□□□□ -1.91
CHD3Q12873 AC092641.1-201ENST00000440229 772 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 TXNP1-201ENST00000441872 371 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 RPL7P48-201ENST00000461513 746 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AP000926.1-201ENST00000479573 241 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 TRBV12-2-201ENST00000489763 344 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 RPL7P23-201ENST00000493874 747 ntBASIC3.1□□□□□ -1.91
CHD3Q12873 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.1□□□□□ -1.91
CHD3Q12873 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.1□□□□□ -1.91
CHD3Q12873 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.1□□□□□ -1.91
CHD3Q12873 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.1□□□□□ -1.91
CHD3Q12873 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.1□□□□□ -1.91
CHD3Q12873 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
CHD3Q12873 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms