Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 OR6C64P-201ENST00000419708 825 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 SETP10-201ENST00000424368 814 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 FAM204CP-201ENST00000424489 642 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A4P53420 HSFY7P-201ENST00000432672 318 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 PTP4A1P3-201ENST00000433661 420 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.68□□□□□ -1.82
COL4A4P53420 HSFY8P-201ENST00000437934 318 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 HSFY5P-201ENST00000453726 309 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 S100A11P2-201ENST00000467589 312 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A4P53420 AC022616.2-201ENST00000523185 300 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A4P53420 AC008507.2-201ENST00000588402 1176 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A4P53420 BNIP3P39-201ENST00000601077 554 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AL357094.1-201ENST00000603845 844 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AC073657.2-201ENST00000605661 303 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AC100814.1-201ENST00000606963 623 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AL354696.1-201ENST00000614652 497 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AC109809.1-201ENST00000619665 545 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 RMST_9.1-201ENST00000619945 193 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
COL4A4P53420 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A4P53420 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A4P53420 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
COL4A4P53420 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A4P53420 AC119744.1-201ENST00000454746 1715 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 DDX6P1-205ENST00000441966 1436 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A4P53420 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A4P53420 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A4P53420 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A4P53420 SNORA44-201ENST00000384584 132 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.68□□□□□ -1.82
COL4A4P53420 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.68□□□□□ -1.82
COL4A4P53420 AC006989.1-201ENST00000427212 131 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 NPM1P48-201ENST00000436002 853 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A4P53420 RPL7P48-201ENST00000461513 746 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.68□□□□□ -1.82
COL4A4P53420 HAUS1P1-201ENST00000505275 832 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A4P53420 AC005798.1-201ENST00000513715 387 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 Y_RNA.673-201ENST00000516306 88 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A4P53420 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.68□□□□□ -1.82
COL4A4P53420 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A4P53420 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.68□□□□□ -1.82
COL4A4P53420 AC020914.4-201ENST00000597690 277 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 BRDTP1-201ENST00000605735 677 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 AL451064.1-201ENST00000607718 471 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.68□□□□□ -1.82
COL4A4P53420 AC023510.2-201ENST00000622162 746 ntBASIC3.68□□□□□ -1.82
COL4A4P53420 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.68□□□□□ -1.82
COL4A4P53420 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL4A4P53420 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
COL4A4P53420 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
COL4A4P53420 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.67□□□□□ -1.82
COL4A4P53420 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A4P53420 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A4P53420 FAM35BP-202ENST00000497389 3337 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC3.67□□□□□ -1.82
COL4A4P53420 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
COL4A4P53420 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A4P53420 AL589826.1-201ENST00000340697 249 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A4P53420 NPM1P10-201ENST00000398310 865 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.67□□□□□ -1.82
COL4A4P53420 MTATP6P17-201ENST00000431030 672 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.67□□□□□ -1.82
COL4A4P53420 U3.44-201ENST00000458938 192 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 AC004924.1-201ENST00000480160 781 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 RNU6-467P-201ENST00000517027 110 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.67□□□□□ -1.82
COL4A4P53420 AP000926.4-201ENST00000527351 454 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 AC004024.1-201ENST00000549244 247 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 AL390334.1-201ENST00000556395 450 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.67□□□□□ -1.82
COL4A4P53420 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.67□□□□□ -1.82
COL4A4P53420 AC093732.2-201ENST00000607950 274 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 AC105227.2-201ENST00000615075 605 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.67□□□□□ -1.82
COL4A4P53420 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.67□□□□□ -1.82
COL4A4P53420 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL4A4P53420 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
COL4A4P53420 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
COL4A4P53420 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
COL4A4P53420 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A4P53420 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A4P53420 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A4P53420 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A4P53420 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.66□□□□□ -1.82
COL4A4P53420 RPS26P47-201ENST00000427219 348 ntBASIC3.66□□□□□ -1.82
COL4A4P53420 RPS20P1-201ENST00000434853 354 ntBASIC3.66□□□□□ -1.82
COL4A4P53420 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.66□□□□□ -1.82
COL4A4P53420 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.66□□□□□ -1.82
COL4A4P53420 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.66□□□□□ -1.82
COL4A4P53420 AC010307.1-201ENST00000467206 836 ntBASIC3.66□□□□□ -1.82
COL4A4P53420 AC011825.1-201ENST00000484967 388 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms