Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.35□□□□□ -1.87
USF1P22415 COX6B1P6-201ENST00000522347 255 ntBASIC3.35□□□□□ -1.87
USF1P22415 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.35□□□□□ -1.87
USF1P22415 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
USF1P22415 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.35□□□□□ -1.87
USF1P22415 AP000919.1-202ENST00000581139 1264 ntBASIC3.35□□□□□ -1.87
USF1P22415 AC012417.1-201ENST00000582307 1039 ntBASIC3.35□□□□□ -1.87
USF1P22415 AC015911.5-201ENST00000587076 451 ntBASIC3.35□□□□□ -1.87
USF1P22415 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 AC104662.1-201ENST00000604448 511 ntBASIC3.35□□□□□ -1.87
USF1P22415 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.35□□□□□ -1.87
USF1P22415 AL121772.2-201ENST00000614331 297 ntBASIC3.35□□□□□ -1.87
USF1P22415 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 ATE1-AS1-202ENST00000636460 506 ntBASIC3.35□□□□□ -1.87
USF1P22415 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
USF1P22415 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
USF1P22415 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
USF1P22415 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
USF1P22415 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.35□□□□□ -1.87
USF1P22415 AL353746.1-201ENST00000566293 6881 ntBASIC3.35□□□□□ -1.87
USF1P22415 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.35□□□□□ -1.87
USF1P22415 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
USF1P22415 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
USF1P22415 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.35□□□□□ -1.87
USF1P22415 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.35□□□□□ -1.87
USF1P22415 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.35□□□□□ -1.87
USF1P22415 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USF1P22415 HSPA8P19-201ENST00000505359 1517 ntBASIC3.34□□□□□ -1.87
USF1P22415 ZNF90P1-201ENST00000480493 1951 ntBASIC3.34□□□□□ -1.87
USF1P22415 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.34□□□□□ -1.87
USF1P22415 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USF1P22415 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USF1P22415 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USF1P22415 MIR30B-201ENST00000384850 88 ntBASIC3.34□□□□□ -1.87
USF1P22415 RNU2-65P-201ENST00000410162 185 ntBASIC3.34□□□□□ -1.87
USF1P22415 RNU2-6P-201ENST00000411404 190 ntBASIC3.34□□□□□ -1.87
USF1P22415 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.34□□□□□ -1.87
USF1P22415 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.34□□□□□ -1.87
USF1P22415 RPL31P45-201ENST00000419532 356 ntBASIC3.34□□□□□ -1.87
USF1P22415 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.34□□□□□ -1.87
USF1P22415 AL358472.1-201ENST00000431295 329 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.34□□□□□ -1.87
USF1P22415 AC097499.1-201ENST00000444277 208 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC092685.1-201ENST00000447960 1243 ntBASIC3.34□□□□□ -1.87
USF1P22415 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.34□□□□□ -1.87
USF1P22415 SNORD108-201ENST00000459332 71 ntBASIC3.34□□□□□ -1.87
USF1P22415 RPL9P32-201ENST00000464118 620 ntBASIC3.34□□□□□ -1.87
USF1P22415 RPL21P103-201ENST00000479921 488 ntBASIC3.34□□□□□ -1.87
USF1P22415 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.34□□□□□ -1.87
USF1P22415 AC012170.1-201ENST00000495139 359 ntBASIC3.34□□□□□ -1.87
USF1P22415 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.34□□□□□ -1.87
USF1P22415 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC3.34□□□□□ -1.87
USF1P22415 IGKV2-38-201ENST00000517443 247 ntBASIC3.34□□□□□ -1.87
USF1P22415 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
USF1P22415 PTP4A1P6-201ENST00000531034 478 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.34□□□□□ -1.87
USF1P22415 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.34□□□□□ -1.87
USF1P22415 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.34□□□□□ -1.87
USF1P22415 AC090751.1-201ENST00000566966 267 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.34□□□□□ -1.87
USF1P22415 AC015726.1-201ENST00000602353 681 ntBASIC3.34□□□□□ -1.87
USF1P22415 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
USF1P22415 AC018618.2-201ENST00000604770 446 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC011374.2-201ENST00000607135 526 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC015802.5-201ENST00000607478 399 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC105429.2-201ENST00000610567 517 ntBASIC3.34□□□□□ -1.87
USF1P22415 AC005344.1-201ENST00000613391 459 ntBASIC3.34□□□□□ -1.87
USF1P22415 AL162233.1-201ENST00000620014 944 ntBASIC3.34□□□□□ -1.87
USF1P22415 AL139089.1-201ENST00000620372 975 ntBASIC3.34□□□□□ -1.87
USF1P22415 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
USF1P22415 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.34□□□□□ -1.87
USF1P22415 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.34□□□□□ -1.87
USF1P22415 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
USF1P22415 AL021368.2-201ENST00000606125 5352 ntBASIC3.34□□□□□ -1.88
USF1P22415 AP004289.2-201ENST00000444413 1457 ntBASIC3.34□□□□□ -1.88
USF1P22415 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.34□□□□□ -1.88
USF1P22415 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
USF1P22415 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.33□□□□□ -1.88
USF1P22415 ZNF33CP-201ENST00000432492 2030 ntBASIC3.33□□□□□ -1.88
USF1P22415 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USF1P22415 RNA5SP391-201ENST00000363456 119 ntBASIC3.33□□□□□ -1.88
USF1P22415 SNORD51.1-201ENST00000365405 77 ntBASIC3.33□□□□□ -1.88
USF1P22415 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.33□□□□□ -1.88
USF1P22415 SNORA3.3-201ENST00000408712 125 ntBASIC3.33□□□□□ -1.88
USF1P22415 SNORA3C-201ENST00000408792 125 ntBASIC3.33□□□□□ -1.88
USF1P22415 RAB9AP3-201ENST00000412737 573 ntBASIC3.33□□□□□ -1.88
USF1P22415 PGBD4P8-201ENST00000412993 562 ntBASIC3.33□□□□□ -1.88
USF1P22415 AC004987.3-201ENST00000413879 771 ntBASIC3.33□□□□□ -1.88
USF1P22415 RPL7P4-203ENST00000430239 730 ntBASIC3.33□□□□□ -1.88
USF1P22415 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.33□□□□□ -1.88
USF1P22415 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.33□□□□□ -1.88
USF1P22415 TBCAP1-201ENST00000436520 327 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms