Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL445213.1-201ENST00000412589 747 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A1P20908 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A1P20908 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A1P20908 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A1P20908 AC097262.1-201ENST00000452559 548 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A1P20908 RN7SL594P-201ENST00000470590 287 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC011825.1-201ENST00000484967 388 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 HIGD1AP3-201ENST00000515857 278 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL5A1P20908 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.3□□□□□ -1.88
COL5A1P20908 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A1P20908 AC016252.1-201ENST00000609721 474 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL5A1P20908 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
COL5A1P20908 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL5A1P20908 LINC02471-203ENST00000641941 4752 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL5A1P20908 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
COL5A1P20908 AC116158.1-201ENST00000560231 2129 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.3□□□□□ -1.88
COL5A1P20908 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
COL5A1P20908 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.3□□□□□ -1.88
COL5A1P20908 AL024507.1-201ENST00000412741 274 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A1P20908 Y_RNA.638-201ENST00000459374 113 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC010307.1-201ENST00000467206 836 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC138409.2-202ENST00000507274 458 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.3□□□□□ -1.88
COL5A1P20908 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL5A1P20908 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.3□□□□□ -1.88
COL5A1P20908 AL121576.1-201ENST00000556055 276 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.3□□□□□ -1.88
COL5A1P20908 BNIP3P10-201ENST00000605360 577 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.3□□□□□ -1.88
COL5A1P20908 AC068722.2-201ENST00000618734 544 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 AC016542.2-201ENST00000624201 619 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 BMS1P21-201ENST00000634565 365 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
COL5A1P20908 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL5A1P20908 AC005183.1-201ENST00000603687 1979 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 MTCO1P22-201ENST00000604619 1360 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 MIR449A-201ENST00000362113 91 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 RNU6-249P-201ENST00000363016 102 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.29□□□□□ -1.88
COL5A1P20908 RNU1-89P-201ENST00000384592 164 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 GSTA8P-201ENST00000404253 637 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 HSPE1P8-201ENST00000406997 288 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL5A1P20908 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC3.29□□□□□ -1.88
COL5A1P20908 AL589765.3-201ENST00000446084 462 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 ANP32BP2-201ENST00000454525 545 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 HMGB1P21-201ENST00000502313 581 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.29□□□□□ -1.88
COL5A1P20908 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL5A1P20908 RPL12P22-201ENST00000519073 490 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.29□□□□□ -1.88
COL5A1P20908 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.29□□□□□ -1.88
COL5A1P20908 AC004024.1-201ENST00000549244 247 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.29□□□□□ -1.88
COL5A1P20908 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC3.29□□□□□ -1.88
COL5A1P20908 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.29□□□□□ -1.88
COL5A1P20908 AC093732.2-201ENST00000607950 274 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 AC009464.1-201ENST00000615731 469 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL5A1P20908 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.29□□□□□ -1.88
COL5A1P20908 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL5A1P20908 ZNF826P-207ENST00000622273 1910 ntBASIC3.29□□□□□ -1.88
COL5A1P20908 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A1P20908 AL136131.1-201ENST00000406079 803 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 RNU4-47P-201ENST00000410876 114 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 AC006989.1-201ENST00000427212 131 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 AC009263.1-201ENST00000441193 1239 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A1P20908 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.28□□□□□ -1.88
COL5A1P20908 AC005798.1-201ENST00000513715 387 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.28□□□□□ -1.88
COL5A1P20908 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.28□□□□□ -1.88
COL5A1P20908 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
COL5A1P20908 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC3.28□□□□□ -1.88
COL5A1P20908 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A1P20908 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A1P20908 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.28□□□□□ -1.88
COL5A1P20908 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC3.28□□□□□ -1.88
COL5A1P20908 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.28□□□□□ -1.88
COL5A1P20908 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A1P20908 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.28□□□□□ -1.88
COL5A1P20908 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A1P20908 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.28□□□□□ -1.88
COL5A1P20908 AL136116.1-201ENST00000403591 381 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 HMGN1P24-201ENST00000412282 298 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.28□□□□□ -1.88
COL5A1P20908 MRPS18BP2-201ENST00000434310 759 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.28□□□□□ -1.88
COL5A1P20908 DNAJC19P8-201ENST00000452887 259 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 MTCO3P16-201ENST00000454456 754 ntBASIC3.28□□□□□ -1.88
COL5A1P20908 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.28□□□□□ -1.88
COL5A1P20908 RPL7P38-201ENST00000488396 739 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms