Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.67□□□□□ -1.82
SDC1P18827 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.67□□□□□ -1.82
SDC1P18827 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC3.67□□□□□ -1.82
SDC1P18827 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC1P18827 HMGB1P45-201ENST00000435986 653 ntBASIC3.67□□□□□ -1.82
SDC1P18827 Z74696.2-201ENST00000436514 498 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC1P18827 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
SDC1P18827 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC1P18827 AC096992.1-201ENST00000459808 709 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC006463.2-201ENST00000473326 348 ntBASIC3.67□□□□□ -1.82
SDC1P18827 RPS23P1-201ENST00000491662 432 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC110792.1-201ENST00000491826 472 ntBASIC3.67□□□□□ -1.82
SDC1P18827 TPT1P3-201ENST00000492841 512 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC1P18827 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC1P18827 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.67□□□□□ -1.82
SDC1P18827 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC1P18827 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.67□□□□□ -1.82
SDC1P18827 RNA5SP208-201ENST00000516156 78 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC008802.1-201ENST00000519121 791 ntBASIC3.67□□□□□ -1.82
SDC1P18827 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC1P18827 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.67□□□□□ -1.82
SDC1P18827 AC092747.2-201ENST00000545069 983 ntBASIC3.67□□□□□ -1.82
SDC1P18827 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC1P18827 AC104072.1-201ENST00000568817 668 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC023824.3-201ENST00000569003 562 ntBASIC3.67□□□□□ -1.82
SDC1P18827 MIR4644-201ENST00000579929 84 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC090312.2-201ENST00000582687 378 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AL137849.1-201ENST00000604767 169 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC110741.2-201ENST00000605278 268 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC010857.1-201ENST00000606398 594 ntBASIC3.67□□□□□ -1.82
SDC1P18827 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SDC1P18827 AC008759.3-201ENST00000613300 508 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC018926.3-201ENST00000618841 406 ntBASIC3.67□□□□□ -1.82
SDC1P18827 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AC092608.3-201ENST00000625017 386 ntBASIC3.67□□□□□ -1.82
SDC1P18827 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.67□□□□□ -1.82
SDC1P18827 MIR492-201ENST00000638676 116 ntBASIC3.67□□□□□ -1.82
SDC1P18827 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC1P18827 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC1P18827 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SDC1P18827 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC1P18827 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC1P18827 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC1P18827 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
SDC1P18827 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC1P18827 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC1P18827 AC053481.2-202ENST00000582394 1500 ntBASIC3.66□□□□□ -1.82
SDC1P18827 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC1P18827 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
SDC1P18827 RNU6-932P-201ENST00000391108 106 ntBASIC3.66□□□□□ -1.82
SDC1P18827 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SDC1P18827 HSPE1P8-201ENST00000406997 288 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AC069282.1-201ENST00000411911 526 ntBASIC3.66□□□□□ -1.82
SDC1P18827 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC1P18827 AC004022.2-201ENST00000413824 193 ntBASIC3.66□□□□□ -1.82
SDC1P18827 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC1P18827 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC1P18827 RPL21P109-201ENST00000422213 475 ntBASIC3.66□□□□□ -1.82
SDC1P18827 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.66□□□□□ -1.82
SDC1P18827 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC1P18827 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC1P18827 RPL7P19-201ENST00000469948 618 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AC104689.1-201ENST00000473356 768 ntBASIC3.66□□□□□ -1.82
SDC1P18827 RPS4XP15-201ENST00000489210 795 ntBASIC3.66□□□□□ -1.82
SDC1P18827 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SDC1P18827 RAC1P2-201ENST00000511164 579 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.66□□□□□ -1.82
SDC1P18827 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC1P18827 SUMO2P20-201ENST00000520803 283 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AC104115.2-201ENST00000523026 687 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AC091515.1-201ENST00000548110 679 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC1P18827 AC009101.1-201ENST00000568135 242 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC1P18827 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC1P18827 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.66□□□□□ -1.82
SDC1P18827 BNIP3P4-201ENST00000604946 565 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AL591034.3-201ENST00000605511 685 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC1P18827 MIR6716-201ENST00000613413 80 ntBASIC3.66□□□□□ -1.82
SDC1P18827 AC243756.2-201ENST00000618406 463 ntBASIC3.66□□□□□ -1.82
SDC1P18827 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC1P18827 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC1P18827 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
SDC1P18827 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC1P18827 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC1P18827 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.66□□□□□ -1.82
SDC1P18827 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
SDC1P18827 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
SDC1P18827 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
SDC1P18827 NSRP1P1-201ENST00000444067 1693 ntBASIC3.65□□□□□ -1.82
SDC1P18827 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SDC1P18827 AL121657.1-201ENST00000327215 531 ntBASIC3.65□□□□□ -1.83
SDC1P18827 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.65□□□□□ -1.83
SDC1P18827 RNA5SP443-201ENST00000363083 132 ntBASIC3.65□□□□□ -1.83
SDC1P18827 RNA5SP391-201ENST00000363456 119 ntBASIC3.65□□□□□ -1.83
SDC1P18827 OR52E6-202ENST00000379946 954 ntBASIC3.65□□□□□ -1.83
SDC1P18827 SNORA56-201ENST00000383966 129 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms