Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL6A3P12111 ASNSP1-201ENST00000518311 1939 ntBASIC3.34□□□□□ -1.88
COL6A3P12111 AC019072.1-201ENST00000604535 1551 ntBASIC3.34□□□□□ -1.88
COL6A3P12111 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A3P12111 MIR196B-201ENST00000384852 84 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 AL592045.1-201ENST00000429867 352 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 RPS24P13-201ENST00000442520 397 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.33□□□□□ -1.88
COL6A3P12111 AC090877.1-201ENST00000561418 344 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A3P12111 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 AC105402.1-201ENST00000413336 545 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.33□□□□□ -1.88
COL6A3P12111 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.33□□□□□ -1.88
COL6A3P12111 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A3P12111 NSRP1P1-201ENST00000444067 1693 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
COL6A3P12111 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A3P12111 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
COL6A3P12111 AC118273.1-201ENST00000525324 3006 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A3P12111 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.33□□□□□ -1.88
COL6A3P12111 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A3P12111 RPL23AP67-201ENST00000465341 474 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 RPL23AP73-201ENST00000492507 471 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.33□□□□□ -1.88
COL6A3P12111 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A3P12111 OR5AC4P-202ENST00000642086 985 ntBASIC3.33□□□□□ -1.88
COL6A3P12111 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.32□□□□□ -1.88
COL6A3P12111 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.32□□□□□ -1.88
COL6A3P12111 RN7SKP220-201ENST00000410611 288 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.32□□□□□ -1.88
COL6A3P12111 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.32□□□□□ -1.88
COL6A3P12111 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.32□□□□□ -1.88
COL6A3P12111 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
COL6A3P12111 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC3.32□□□□□ -1.88
COL6A3P12111 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 THAP12P8-201ENST00000447914 2115 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 AC005539.1-201ENST00000443768 1479 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 AL161431.1-201ENST00000618966 4205 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.32□□□□□ -1.88
COL6A3P12111 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL6A3P12111 RNU1-15P-201ENST00000353977 144 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 Y_RNA.595-201ENST00000410403 105 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC3.32□□□□□ -1.88
COL6A3P12111 RPL9P32-201ENST00000464118 620 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 AP003122.3-201ENST00000526316 255 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.32□□□□□ -1.88
COL6A3P12111 MIR4648-201ENST00000580107 72 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 AC026634.1-201ENST00000634369 198 ntBASIC3.32□□□□□ -1.88
COL6A3P12111 AC092079.1-201ENST00000558620 1985 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC3.31□□□□□ -1.88
COL6A3P12111 HMGN2P3-201ENST00000433603 273 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 HMGN2P5-201ENST00000436882 273 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.31□□□□□ -1.88
COL6A3P12111 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL6A3P12111 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.31□□□□□ -1.88
COL6A3P12111 AC099489.2-201ENST00000574976 260 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 AL110115.1-201ENST00000614396 364 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 AC010168.2-201ENST00000562691 5428 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 AC007390.2-201ENST00000606229 3803 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC3.31□□□□□ -1.88
COL6A3P12111 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
COL6A3P12111 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL6A3P12111 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL6A3P12111 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL6A3P12111 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL6A3P12111 GAPDHP39-201ENST00000481866 979 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.31□□□□□ -1.88
COL6A3P12111 AC026333.2-201ENST00000542164 106 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
COL6A3P12111 AC015849.2-201ENST00000605738 409 ntBASIC3.31□□□□□ -1.88
COL6A3P12111 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.31□□□□□ -1.88
COL6A3P12111 FTX-210ENST00000603037 8347 ntTSL 5 BASIC3.31□□□□□ -1.88
COL6A3P12111 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.3□□□□□ -1.88
COL6A3P12111 HMGN2P23-201ENST00000456759 269 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL6A3P12111 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC3.3□□□□□ -1.88
COL6A3P12111 AL121766.1-201ENST00000547436 487 ntBASIC3.3□□□□□ -1.88
COL6A3P12111 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.3□□□□□ -1.88
COL6A3P12111 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL6A3P12111 Z95331.1-201ENST00000623075 23112 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms