Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-276P-201ENST00000516114 96 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 SNORA67.7-201ENST00000516664 135 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD4P09016 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD4P09016 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXD4P09016 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXD4P09016 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD4P09016 AP003717.3-201ENST00000544832 1180 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD4P09016 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD4P09016 RPL23AP97-201ENST00000568955 471 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXD4P09016 MIR4716-201ENST00000579628 84 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 MIR4286-201ENST00000580651 93 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 MIR3158-1-201ENST00000583596 81 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 MTCO2P2-201ENST00000591258 225 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 VN1R84P-201ENST00000593697 235 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXD4P09016 AL161729.3-201ENST00000603533 673 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AC112220.2-201ENST00000605513 533 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXD4P09016 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXD4P09016 AC006133.1-201ENST00000617106 264 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXD4P09016 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD4P09016 AL356863.1-201ENST00000623378 1080 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 FP325313.1-201ENST00000638228 703 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD4P09016 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HOXD4P09016 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
HOXD4P09016 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.84□□□□□ -1.8
HOXD4P09016 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXD4P09016 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXD4P09016 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXD4P09016 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HOXD4P09016 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD4P09016 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
HOXD4P09016 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HOXD4P09016 MIR372-201ENST00000362225 67 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 SNORA62.2-201ENST00000364672 152 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 RNA5SP22-201ENST00000365393 109 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD4P09016 MIR554-201ENST00000384874 96 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 ATP5F1P3-201ENST00000397213 657 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HOXD4P09016 RN7SKP235-201ENST00000410662 305 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 AL356095.1-201ENST00000417217 199 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 LINC01347-201ENST00000417964 355 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD4P09016 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.83□□□□□ -1.8
HOXD4P09016 AC093422.3-201ENST00000428506 305 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC073069.1-201ENST00000428657 441 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 AL117339.2-201ENST00000430475 180 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 MTATP6P17-201ENST00000431030 672 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD4P09016 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD4P09016 RPL5P32-201ENST00000454085 879 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 MTND6P6-201ENST00000478031 263 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 RN7SL132P-201ENST00000478131 296 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD4P09016 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 SNORD116-26-201ENST00000516006 96 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC023632.4-201ENST00000517783 191 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC091163.3-201ENST00000518269 1144 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 IGHV3-32-201ENST00000519182 355 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AP001207.2-201ENST00000519490 539 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HOXD4P09016 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 CYB5AP5-201ENST00000549779 389 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 CBX3P5-201ENST00000552017 521 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 AL109741.3-201ENST00000561748 592 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD4P09016 AC110743.1-201ENST00000584870 478 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 BNIP3P38-201ENST00000601117 544 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC093673.2-201ENST00000609674 331 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC006946.3-201ENST00000609791 756 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC010608.2-201ENST00000624830 470 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD4P09016 AC083865.1-201ENST00000636634 831 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 AC132825.7-201ENST00000638744 335 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD4P09016 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD4P09016 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
HOXD4P09016 MARK2P15-201ENST00000432204 2186 ntBASIC3.83□□□□□ -1.8
HOXD4P09016 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
HOXD4P09016 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD4P09016 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD4P09016 LINC02471-203ENST00000641941 4752 ntBASIC3.82□□□□□ -1.8
HOXD4P09016 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms