Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH4O15457 FAM204CP-201ENST00000424489 642 ntBASIC4.04□□□□□ -1.76
MSH4O15457 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH4O15457 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.04□□□□□ -1.76
MSH4O15457 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH4O15457 VN1R34P-201ENST00000447387 883 ntBASIC4.04□□□□□ -1.76
MSH4O15457 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH4O15457 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH4O15457 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.04□□□□□ -1.76
MSH4O15457 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH4O15457 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH4O15457 NDUFB4P12-201ENST00000513465 390 ntBASIC4.04□□□□□ -1.76
MSH4O15457 AC005798.1-201ENST00000513715 387 ntBASIC4.04□□□□□ -1.76
MSH4O15457 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.04□□□□□ -1.76
MSH4O15457 OR5B10P-201ENST00000532869 642 ntBASIC4.04□□□□□ -1.76
MSH4O15457 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH4O15457 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC4.04□□□□□ -1.76
MSH4O15457 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
MSH4O15457 AC015849.2-201ENST00000605738 409 ntBASIC4.04□□□□□ -1.76
MSH4O15457 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH4O15457 AL118556.2-201ENST00000614375 824 ntBASIC4.04□□□□□ -1.76
MSH4O15457 AL354696.1-201ENST00000614652 497 ntBASIC4.04□□□□□ -1.76
MSH4O15457 AC116563.2-201ENST00000624751 535 ntBASIC4.04□□□□□ -1.76
MSH4O15457 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH4O15457 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH4O15457 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSH4O15457 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.04□□□□□ -1.76
MSH4O15457 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH4O15457 MAPK10-373ENST00000641983 6772 ntBASIC4.04□□□□□ -1.76
MSH4O15457 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSH4O15457 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
MSH4O15457 AC073073.2-201ENST00000609827 2578 ntBASIC4.04□□□□□ -1.76
MSH4O15457 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH4O15457 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
MSH4O15457 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH4O15457 AL627171.1-201ENST00000618845 1308 ntBASIC4.03□□□□□ -1.76
MSH4O15457 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH4O15457 RNA5SP322-201ENST00000363617 119 ntBASIC4.03□□□□□ -1.76
MSH4O15457 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH4O15457 RPL23AP48-201ENST00000406913 488 ntBASIC4.03□□□□□ -1.76
MSH4O15457 RPS29P4-201ENST00000414733 161 ntBASIC4.03□□□□□ -1.76
MSH4O15457 AC017079.2-201ENST00000416102 485 ntBASIC4.03□□□□□ -1.76
MSH4O15457 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH4O15457 AC009965.2-201ENST00000425328 970 ntBASIC4.03□□□□□ -1.76
MSH4O15457 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH4O15457 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
MSH4O15457 RPL21P23-201ENST00000446654 460 ntBASIC4.03□□□□□ -1.76
MSH4O15457 AC091153.1-201ENST00000466297 402 ntBASIC4.03□□□□□ -1.76
MSH4O15457 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH4O15457 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH4O15457 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.03□□□□□ -1.76
MSH4O15457 RNU6-579P-201ENST00000516879 102 ntBASIC4.03□□□□□ -1.76
MSH4O15457 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.03□□□□□ -1.76
MSH4O15457 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH4O15457 DEFB109D-201ENST00000529497 240 ntBASIC4.03□□□□□ -1.76
MSH4O15457 AC004923.2-201ENST00000529649 369 ntBASIC4.03□□□□□ -1.76
MSH4O15457 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH4O15457 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
MSH4O15457 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH4O15457 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH4O15457 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH4O15457 AL731537.2-201ENST00000561565 951 ntBASIC4.03□□□□□ -1.76
MSH4O15457 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH4O15457 AL109741.3-201ENST00000561748 592 ntBASIC4.03□□□□□ -1.76
MSH4O15457 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.03□□□□□ -1.76
MSH4O15457 AC006116.10-201ENST00000591836 581 ntBASIC4.03□□□□□ -1.76
MSH4O15457 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.03□□□□□ -1.76
MSH4O15457 AC068790.5-201ENST00000602741 355 ntBASIC4.03□□□□□ -1.76
MSH4O15457 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.03□□□□□ -1.76
MSH4O15457 MIR7973-1-201ENST00000614683 76 ntBASIC4.03□□□□□ -1.76
MSH4O15457 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.03□□□□□ -1.76
MSH4O15457 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
MSH4O15457 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
MSH4O15457 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH4O15457 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.03□□□□□ -1.76
MSH4O15457 AC114546.3-201ENST00000623582 1734 ntBASIC4.03□□□□□ -1.76
MSH4O15457 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH4O15457 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
MSH4O15457 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSH4O15457 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
MSH4O15457 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.02□□□□□ -1.77
MSH4O15457 AC017007.4-201ENST00000503353 1352 ntBASIC4.02□□□□□ -1.77
MSH4O15457 AL365440.1-201ENST00000436135 2167 ntBASIC4.02□□□□□ -1.77
MSH4O15457 RAD1P1-201ENST00000231383 813 ntBASIC4.02□□□□□ -1.77
MSH4O15457 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
MSH4O15457 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
MSH4O15457 RNA5SP119-201ENST00000362715 117 ntBASIC4.02□□□□□ -1.77
MSH4O15457 RN7SKP53-201ENST00000411337 315 ntBASIC4.02□□□□□ -1.77
MSH4O15457 RPS3AP25-201ENST00000411660 793 ntBASIC4.02□□□□□ -1.77
MSH4O15457 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.02□□□□□ -1.77
MSH4O15457 LINC01881-201ENST00000416103 412 ntBASIC4.02□□□□□ -1.77
MSH4O15457 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.02□□□□□ -1.77
MSH4O15457 MTND4P11-201ENST00000417020 1058 ntBASIC4.02□□□□□ -1.77
MSH4O15457 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.02□□□□□ -1.77
MSH4O15457 AL031663.1-201ENST00000437445 219 ntBASIC4.02□□□□□ -1.77
MSH4O15457 SKP1P1-201ENST00000438081 489 ntBASIC4.02□□□□□ -1.77
MSH4O15457 CBX1P4-201ENST00000439415 457 ntBASIC4.02□□□□□ -1.77
MSH4O15457 PDSS1P2-201ENST00000449397 678 ntBASIC4.02□□□□□ -1.77
MSH4O15457 AC239809.1-201ENST00000450470 217 ntBASIC4.02□□□□□ -1.77
MSH4O15457 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms