Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC13.02□□□□□ -0.32
VPS13DQ5THJ4 AP002414.4-201ENST00000589764 1148 ntBASIC13.02□□□□□ -0.32
VPS13DQ5THJ4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
VPS13DQ5THJ4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 AP002469.2-201ENST00000531724 424 ntBASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 HBZP1-201ENST00000354915 429 ntBASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 ZNF444P1-201ENST00000559497 298 ntBASIC13.02□□□□□ -0.33
VPS13DQ5THJ4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 AL691432.2-201ENST00000607222 2038 ntBASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 HLA-F-220ENST00000434407 884 ntBASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 SEC1P-202ENST00000473944 940 ntBASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 RNA5SP419-201ENST00000515908 135 ntBASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
VPS13DQ5THJ4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC13□□□□□ -0.33
VPS13DQ5THJ4 AP005212.1-201ENST00000581547 1997 ntBASIC13□□□□□ -0.33
VPS13DQ5THJ4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13□□□□□ -0.33
VPS13DQ5THJ4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13□□□□□ -0.33
VPS13DQ5THJ4 AC007375.3-201ENST00000600936 2314 ntBASIC13□□□□□ -0.33
VPS13DQ5THJ4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC13□□□□□ -0.33
VPS13DQ5THJ4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC13□□□□□ -0.33
VPS13DQ5THJ4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13□□□□□ -0.33
VPS13DQ5THJ4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
VPS13DQ5THJ4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 AC036111.1-201ENST00000533973 1582 ntBASIC13□□□□□ -0.33
VPS13DQ5THJ4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
VPS13DQ5THJ4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC13□□□□□ -0.33
VPS13DQ5THJ4 AC092720.2-201ENST00000602388 1665 ntBASIC13□□□□□ -0.33
VPS13DQ5THJ4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 AC111152.3-201ENST00000569699 673 ntBASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 AC073314.1-201ENST00000568729 2216 ntBASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
VPS13DQ5THJ4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms