Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC15.03■□□□□ -0
COL6A5A8TX70 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC15.03■□□□□ -0
COL6A5A8TX70 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.03■□□□□ -0
COL6A5A8TX70 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.03■□□□□ -0
COL6A5A8TX70 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.03■□□□□ -0
COL6A5A8TX70 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.03■□□□□ -0
COL6A5A8TX70 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.03■□□□□ -0
COL6A5A8TX70 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.03■□□□□ -0
COL6A5A8TX70 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL6A5A8TX70 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
COL6A5A8TX70 MFF-203ENST00000349901 1716 ntTSL 2 BASIC15.03■□□□□ -0
COL6A5A8TX70 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC15.03■□□□□ -0
COL6A5A8TX70 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
COL6A5A8TX70 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC15.03■□□□□ -0
COL6A5A8TX70 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
COL6A5A8TX70 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.02■□□□□ -0
COL6A5A8TX70 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
COL6A5A8TX70 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC15.02■□□□□ -0
COL6A5A8TX70 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.02■□□□□ -0
COL6A5A8TX70 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.02■□□□□ -0
COL6A5A8TX70 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.02■□□□□ -0
COL6A5A8TX70 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.02■□□□□ -0
COL6A5A8TX70 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC15.02■□□□□ -0
COL6A5A8TX70 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL6A5A8TX70 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC15.02■□□□□ -0
COL6A5A8TX70 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A5A8TX70 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A5A8TX70 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A5A8TX70 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A5A8TX70 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.02□□□□□ -0.01
COL6A5A8TX70 RFPL4AP1-201ENST00000530883 850 ntBASIC15.02□□□□□ -0.01
COL6A5A8TX70 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.02□□□□□ -0.01
COL6A5A8TX70 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC15.02□□□□□ -0.01
COL6A5A8TX70 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL6A5A8TX70 AC233702.3-201ENST00000578656 1387 ntBASIC15.02□□□□□ -0.01
COL6A5A8TX70 CREM-210ENST00000374721 2020 ntTSL 5 BASIC15.02□□□□□ -0.01
COL6A5A8TX70 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A5A8TX70 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A5A8TX70 AC211486.1-202ENST00000416371 468 ntBASIC15.01□□□□□ -0.01
COL6A5A8TX70 AC211476.1-201ENST00000503899 468 ntBASIC15.01□□□□□ -0.01
COL6A5A8TX70 AC093909.1-201ENST00000504731 1122 ntBASIC15.01□□□□□ -0.01
COL6A5A8TX70 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A5A8TX70 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A5A8TX70 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A5A8TX70 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A5A8TX70 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 AC242852.2-201ENST00000615738 1807 ntBASIC15.01□□□□□ -0.01
COL6A5A8TX70 GAD2-202ENST00000376248 680 ntTSL 5 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.01□□□□□ -0.01
COL6A5A8TX70 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A5A8TX70 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL6A5A8TX70 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
COL6A5A8TX70 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A5A8TX70 RPS8P6-201ENST00000426177 609 ntBASIC15□□□□□ -0.01
COL6A5A8TX70 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15□□□□□ -0.01
COL6A5A8TX70 IGHV3-22-201ENST00000520721 359 ntBASIC15□□□□□ -0.01
COL6A5A8TX70 CD63-204ENST00000546939 779 ntTSL 3 BASIC15□□□□□ -0.01
COL6A5A8TX70 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC15□□□□□ -0.01
COL6A5A8TX70 AL117328.2-201ENST00000624617 1940 ntBASIC15□□□□□ -0.01
COL6A5A8TX70 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC15□□□□□ -0.01
COL6A5A8TX70 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A5A8TX70 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15□□□□□ -0.01
COL6A5A8TX70 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
COL6A5A8TX70 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15□□□□□ -0.01
COL6A5A8TX70 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15□□□□□ -0.01
COL6A5A8TX70 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15□□□□□ -0.01
COL6A5A8TX70 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A5A8TX70 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A5A8TX70 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A5A8TX70 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL6A5A8TX70 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL6A5A8TX70 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A5A8TX70 BAALC-202ENST00000306391 243 ntTSL 5 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms