Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 NSRP1P1-201ENST00000444067 1693 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 MIR30B-201ENST00000384850 88 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 DEFB130D-201ENST00000426866 237 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 RPL7P4-203ENST00000430239 730 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 GTF2IP12-201ENST00000456547 356 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 GAPDHP36-201ENST00000480688 918 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC073522.1-201ENST00000483312 377 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC110792.2-201ENST00000510278 224 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC087499.8-201ENST00000578406 226 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AL109618.2-201ENST00000605527 211 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AC092574.1-201ENST00000609771 420 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 AP000720.1-201ENST00000625091 483 ntBASIC3.92□□□□□ -1.78
LHX3Q9UBR4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
LHX3Q9UBR4 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 LDHAL6CP-202ENST00000550738 3224 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 MAPK10-253ENST00000641010 4072 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 SNORA63.3-201ENST00000362682 132 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 RNU6-354P-201ENST00000383862 107 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 RNU6-610P-201ENST00000384264 107 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 RPS24P12-201ENST00000402084 394 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 PRELID3BP11-201ENST00000414230 479 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 RPL17P36-201ENST00000420302 549 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 KCTD10P1-201ENST00000434203 625 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 HSFY3P-201ENST00000444242 1191 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 HMGB1P48-201ENST00000446155 598 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC008280.2-201ENST00000455473 307 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 FTH1P2-201ENST00000466086 412 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC146944.2-203ENST00000502493 354 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC139495.1-202ENST00000513164 354 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 HMGB1P1-201ENST00000522557 636 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 CYCSP30-201ENST00000546447 172 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 MIR5685-201ENST00000579080 79 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 RN7SL622P-201ENST00000585292 275 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC008638.3-201ENST00000603341 463 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC015813.4-201ENST00000610469 179 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC099669.2-201ENST00000616549 437 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC009237.17-201ENST00000618111 748 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC006249.1-201ENST00000621223 471 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 AC090229.1-201ENST00000590983 1609 ntBASIC3.91□□□□□ -1.78
LHX3Q9UBR4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms