Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
CCDC88CQ9P219 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
CCDC88CQ9P219 CEP170P1-201ENST00000502249 4587 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 MIR30E-201ENST00000362104 92 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 RNU1-33P-201ENST00000364249 162 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 RNU6-1279P-201ENST00000383917 103 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 RPL21P110-201ENST00000433345 446 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 RPS15AP29-201ENST00000445539 400 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC097262.1-201ENST00000452559 548 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 BTF3P5-201ENST00000457252 467 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AGGF1P3-201ENST00000493675 1213 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 DUXAP6-201ENST00000553858 601 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 CKS1BP3-201ENST00000600888 237 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AL163642.2-201ENST00000604722 1019 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC096586.2-201ENST00000610260 441 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC018816.2-201ENST00000621460 353 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 PNPT1P2-201ENST00000456768 2050 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC107021.2-201ENST00000567714 2095 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 CR382285.2-201ENST00000624662 1495 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 MTND4P10-201ENST00000446199 1363 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC032011.1-201ENST00000611703 1549 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AL645937.1-201ENST00000641739 1652 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC090971.4-201ENST00000560291 1800 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 MIR491-201ENST00000384877 84 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC008280.1-201ENST00000418851 412 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 OR6K4P-201ENST00000423179 955 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC106901.1-201ENST00000425086 698 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 CYCSP32-201ENST00000440548 321 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AC006960.3-201ENST00000561845 705 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 VN1R79P-201ENST00000593540 513 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 AL158062.1-201ENST00000619632 745 ntBASIC3.27□□□□□ -1.89
CCDC88CQ9P219 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC88CQ9P219 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 RNU6-1263P-201ENST00000384601 106 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 MIR23A-201ENST00000385245 73 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AC093698.1-201ENST00000423843 571 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 U3.44-201ENST00000458938 192 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 MTND6P6-201ENST00000478031 263 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 OR5H3P-201ENST00000502817 919 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 WBP1LP4-201ENST00000505043 344 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 RN7SKP5-201ENST00000517045 272 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AP001636.2-201ENST00000525517 696 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 MIR3944-201ENST00000581277 108 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AL033523.1-201ENST00000605153 153 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AC068647.1-201ENST00000489539 2265 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 MIR365B-201ENST00000362317 111 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 PTMAP5-201ENST00000393073 333 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 RNA5SP120-201ENST00000410900 112 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 HMGN1P24-201ENST00000412282 298 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 OSTCP5-201ENST00000425293 453 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 RPS26P47-201ENST00000427219 348 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AL138787.1-202ENST00000437804 898 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC88CQ9P219 AC010285.3-201ENST00000511668 676 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 RNA5SP217-201ENST00000515959 91 ntBASIC3.26□□□□□ -1.89
CCDC88CQ9P219 IGKV2-26-201ENST00000518305 343 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms