Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC092013.1-201ENST00000438795 332 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 ELOCP8-201ENST00000439309 332 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 ELOCP15-201ENST00000442090 332 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 BNIP3P41-201ENST00000503774 571 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 ZNF321P-202ENST00000550843 495 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 VN1R83P-201ENST00000595685 445 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 EIF1P6-201ENST00000600054 334 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 DUXAP3-201ENST00000603616 594 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AL354984.3-201ENST00000604803 325 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AC092954.1-201ENST00000609121 445 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AC064801.1-201ENST00000612025 407 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AL121873.1-201ENST00000616013 524 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AC067852.7-201ENST00000623270 535 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 AC109454.4-201ENST00000623411 649 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 MIR7641-1-201ENST00000627518 61 ntBASIC4.4□□□□□ -1.71
PCDH9Q9HC56 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.4□□□□□ -1.71
PCDH9Q9HC56 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 KPNA2P2-201ENST00000419546 1489 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 LAP3P1-201ENST00000403648 294 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 SNORA11C-201ENST00000408532 129 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 MIR1179-201ENST00000408703 91 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 RNU6-77P-201ENST00000410554 91 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AL008987.1-201ENST00000415528 237 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 Z75741.2-201ENST00000417272 1167 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 RPS29P17-201ENST00000430795 166 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 CEACAMP1-201ENST00000434624 1035 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 RAD23BP3-201ENST00000454157 1152 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AL035404.1-201ENST00000497982 568 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC025554.1-201ENST00000505641 188 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC025674.1-201ENST00000507074 324 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 DEFB109D-201ENST00000529497 240 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 MTCO2P15-201ENST00000532655 656 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 MIR4277-201ENST00000578298 84 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AL139395.1-201ENST00000603662 160 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC021749.1-201ENST00000604322 607 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 MIR7973-1-201ENST00000614683 76 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 MIR7702-201ENST00000621931 59 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AP003485.2-201ENST00000623636 610 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AC140479.6-201ENST00000633535 357 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 ATE1-AS1-202ENST00000636460 506 ntBASIC4.39□□□□□ -1.71
PCDH9Q9HC56 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
PCDH9Q9HC56 AL592437.2-201ENST00000421655 2434 ntBASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms