Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PSMB7P1-201ENST00000556349 514 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 ATP5J2P6-201ENST00000565203 266 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AC008759.1-201ENST00000589783 983 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 RPL21P136-201ENST00000605378 396 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AC020634.1-201ENST00000608701 549 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC117529.2-201ENST00000512159 2068 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 RNA5SP513-201ENST00000364648 118 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 RNU6-207P-201ENST00000384137 107 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AL023807.1-201ENST00000407932 359 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 RNA5SP56-201ENST00000410277 118 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 P2RY10P2-201ENST00000416730 913 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 PPIAP17-201ENST00000438507 471 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 CBX1P1-201ENST00000440184 427 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 RPL23AP16-201ENST00000441715 421 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC017099.1-201ENST00000448261 1028 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 KLRA1P-201ENST00000503499 986 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 HPRT1P1-201ENST00000509498 657 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC048346.1-201ENST00000510247 144 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 IGLVIV-65-201ENST00000517313 360 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC136624.4-201ENST00000573044 370 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AL669831.4-202ENST00000590817 238 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AP001542.2-201ENST00000593141 364 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC103881.1-201ENST00000603476 538 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC006963.1-201ENST00000624003 1052 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AC090506.2-201ENST00000624521 419 ntBASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.65□□□□□ -1.5
CHMP4AQ9BY43 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
CHMP4AQ9BY43 GABPAP-201ENST00000419271 1356 ntBASIC5.65□□□□□ -1.51
CHMP4AQ9BY43 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC5.65□□□□□ -1.51
CHMP4AQ9BY43 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
CHMP4AQ9BY43 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.65□□□□□ -1.51
CHMP4AQ9BY43 AL365440.1-201ENST00000436135 2167 ntBASIC5.65□□□□□ -1.51
CHMP4AQ9BY43 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 RNU6-374P-201ENST00000364146 108 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 OR6K3-202ENST00000368146 996 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 RNU1-44P-201ENST00000384453 163 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AL138880.1-201ENST00000405824 642 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 RNU4-25P-201ENST00000410569 230 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AL513174.1-201ENST00000423182 629 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 C4BPAP2-201ENST00000428434 478 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC012158.1-204ENST00000483430 465 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC010735.1-201ENST00000567305 1026 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 RPL23AP97-201ENST00000568955 471 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 MIR4666A-201ENST00000580160 79 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC090181.2-201ENST00000602975 672 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC025946.2-201ENST00000603398 234 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AL021997.2-201ENST00000615674 271 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC007546.2-201ENST00000623996 360 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 AC000367.1-201ENST00000452711 1766 ntBASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.64□□□□□ -1.51
CHMP4AQ9BY43 RNA5SP175-201ENST00000364275 119 ntBASIC5.63□□□□□ -1.51
CHMP4AQ9BY43 RNVU1-3-201ENST00000364313 161 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms