Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RN7SKP219-201ENST00000516825 296 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 OR4H6P-201ENST00000563771 921 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AL355375.2-201ENST00000574825 175 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC027229.1-201ENST00000583887 253 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AL050343.2-201ENST00000607338 280 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC006924.1-201ENST00000610750 559 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 uc_338.5-201ENST00000611839 155 ntBASIC4.88□□□□□ -1.63
CCDC140Q96MF4 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC4.88□□□□□ -1.63
CCDC140Q96MF4 AC011504.1-201ENST00000623331 4103 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 Y_RNA.231-201ENST00000364358 102 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RNU4-20P-201ENST00000365601 151 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 Y_RNA.419-201ENST00000384041 102 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RNU6-1029P-201ENST00000384109 107 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MIR433-201ENST00000384837 93 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RNU6-903P-201ENST00000391270 109 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 SNORA11.5-201ENST00000408163 128 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RN7SKP146-201ENST00000410242 334 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RNA5SP56-201ENST00000410277 118 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RN7SKP121-201ENST00000410842 305 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC116036.1-201ENST00000412199 367 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MTND3P8-201ENST00000412909 339 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RPS7P14-201ENST00000426405 583 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC093106.2-201ENST00000428212 385 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RPS27AP12-201ENST00000429552 465 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 ERLEC1P1-201ENST00000433806 578 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 LINC00328-2P-201ENST00000436585 219 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MRPL48P1-201ENST00000445390 636 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC016696.1-201ENST00000446949 318 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RPL31P15-201ENST00000449770 338 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RPS27AP3-201ENST00000453803 454 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC005008.1-201ENST00000456151 612 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC007547.1-201ENST00000462177 490 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RN7SL836P-201ENST00000476140 296 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RN7SL326P-201ENST00000477493 296 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RN7SL649P-201ENST00000496974 275 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 OR4D12P-201ENST00000509361 911 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RNA5SP503-201ENST00000517047 117 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 IGHV7-34-1-201ENST00000519200 350 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AP003385.6-201ENST00000531603 374 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC087241.2-201ENST00000535801 324 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MYL2-203ENST00000548438 664 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AL669831.4-202ENST00000590817 238 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 IGKV2OR2-1-201ENST00000605129 304 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 RNU6-89P-201ENST00000606519 100 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 SNORA74.4-201ENST00000607595 199 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MIR6889-201ENST00000613185 59 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MIR6811-201ENST00000620409 58 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AL161637.1-201ENST00000622380 412 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MIR1302-1-201ENST00000637932 143 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms