Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.46□□□□□ -1.54
CUX1P39880 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.46□□□□□ -1.54
CUX1P39880 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CUX1P39880 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CUX1P39880 AC092111.2-201ENST00000611627 1414 ntBASIC5.46□□□□□ -1.54
CUX1P39880 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.46□□□□□ -1.54
CUX1P39880 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.46□□□□□ -1.54
CUX1P39880 AC005229.2-201ENST00000456995 399 ntBASIC5.46□□□□□ -1.54
CUX1P39880 HIGD1AP3-201ENST00000515857 278 ntBASIC5.46□□□□□ -1.54
CUX1P39880 AC135001.1-201ENST00000544546 283 ntBASIC5.46□□□□□ -1.54
CUX1P39880 MIR6715A-201ENST00000615929 79 ntBASIC5.46□□□□□ -1.54
CUX1P39880 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CUX1P39880 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CUX1P39880 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CUX1P39880 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC5.45□□□□□ -1.54
CUX1P39880 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.45□□□□□ -1.54
CUX1P39880 SNORA48.8-201ENST00000391324 134 ntBASIC5.45□□□□□ -1.54
CUX1P39880 NPM1P38-201ENST00000403835 865 ntBASIC5.45□□□□□ -1.54
CUX1P39880 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC5.45□□□□□ -1.54
CUX1P39880 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.45□□□□□ -1.54
CUX1P39880 FCF1P3-201ENST00000496394 590 ntBASIC5.45□□□□□ -1.54
CUX1P39880 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.45□□□□□ -1.54
CUX1P39880 AC103968.1-201ENST00000557841 573 ntBASIC5.45□□□□□ -1.54
CUX1P39880 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC5.45□□□□□ -1.54
CUX1P39880 LSM1P2-201ENST00000604911 322 ntBASIC5.45□□□□□ -1.54
CUX1P39880 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.45□□□□□ -1.54
CUX1P39880 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CUX1P39880 SRP72P2-201ENST00000344851 1979 ntBASIC5.45□□□□□ -1.54
CUX1P39880 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.44□□□□□ -1.54
CUX1P39880 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.44□□□□□ -1.54
CUX1P39880 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.44□□□□□ -1.54
CUX1P39880 BX890604.2-201ENST00000427883 474 ntBASIC5.44□□□□□ -1.54
CUX1P39880 AC000041.1-201ENST00000439655 175 ntBASIC5.44□□□□□ -1.54
CUX1P39880 AL357552.1-201ENST00000445254 415 ntBASIC5.44□□□□□ -1.54
CUX1P39880 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC5.44□□□□□ -1.54
CUX1P39880 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CUX1P39880 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.44□□□□□ -1.54
CUX1P39880 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
CUX1P39880 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.44□□□□□ -1.54
CUX1P39880 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC5.44□□□□□ -1.54
CUX1P39880 MIR3162-201ENST00000581818 82 ntBASIC5.44□□□□□ -1.54
CUX1P39880 AC104984.5-201ENST00000586878 94 ntBASIC5.44□□□□□ -1.54
CUX1P39880 uc_338.25-201ENST00000613756 156 ntBASIC5.44□□□□□ -1.54
CUX1P39880 AC009237.17-201ENST00000618111 748 ntBASIC5.44□□□□□ -1.54
CUX1P39880 AL356321.1-201ENST00000621360 228 ntBASIC5.44□□□□□ -1.54
CUX1P39880 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CUX1P39880 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CUX1P39880 RNA5SP126-201ENST00000365092 109 ntBASIC5.43□□□□□ -1.54
CUX1P39880 AL160275.2-201ENST00000412010 394 ntBASIC5.43□□□□□ -1.54
CUX1P39880 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.43□□□□□ -1.54
CUX1P39880 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC5.43□□□□□ -1.54
CUX1P39880 RPL23AP73-201ENST00000492507 471 ntBASIC5.43□□□□□ -1.54
CUX1P39880 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC5.43□□□□□ -1.54
CUX1P39880 AL162574.2-201ENST00000614618 657 ntBASIC5.43□□□□□ -1.54
CUX1P39880 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.43□□□□□ -1.54
CUX1P39880 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
CUX1P39880 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CUX1P39880 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CUX1P39880 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
CUX1P39880 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CUX1P39880 AC073325.2-201ENST00000339545 159 ntBASIC5.43□□□□□ -1.54
CUX1P39880 SNORA5B-201ENST00000363786 132 ntBASIC5.43□□□□□ -1.54
CUX1P39880 RNA5SP235-201ENST00000365411 114 ntBASIC5.43□□□□□ -1.54
CUX1P39880 AL139095.1-201ENST00000404326 391 ntBASIC5.43□□□□□ -1.54
CUX1P39880 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CUX1P39880 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC5.43□□□□□ -1.54
CUX1P39880 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC5.43□□□□□ -1.54
CUX1P39880 AC233982.1-201ENST00000451247 436 ntBASIC5.43□□□□□ -1.54
CUX1P39880 AC118465.1-201ENST00000513820 1271 ntBASIC5.43□□□□□ -1.54
CUX1P39880 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.43□□□□□ -1.54
CUX1P39880 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC5.43□□□□□ -1.54
CUX1P39880 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC5.43□□□□□ -1.54
CUX1P39880 AC103858.2-201ENST00000621471 543 ntBASIC5.43□□□□□ -1.54
CUX1P39880 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC5.43□□□□□ -1.54
CUX1P39880 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CUX1P39880 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CUX1P39880 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC5.43□□□□□ -1.54
CUX1P39880 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.42□□□□□ -1.54
CUX1P39880 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CUX1P39880 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC5.42□□□□□ -1.54
CUX1P39880 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CUX1P39880 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CUX1P39880 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.42□□□□□ -1.54
CUX1P39880 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.42□□□□□ -1.54
CUX1P39880 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CUX1P39880 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CUX1P39880 TRBV24OR9-2-201ENST00000416632 435 ntBASIC5.42□□□□□ -1.54
CUX1P39880 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC5.42□□□□□ -1.54
CUX1P39880 YWHAEP5-201ENST00000431545 765 ntBASIC5.42□□□□□ -1.54
CUX1P39880 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC5.42□□□□□ -1.54
CUX1P39880 AC008264.1-201ENST00000447612 367 ntBASIC5.42□□□□□ -1.54
CUX1P39880 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.42□□□□□ -1.54
CUX1P39880 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.42□□□□□ -1.54
CUX1P39880 AC087276.1-201ENST00000529659 480 ntBASIC5.42□□□□□ -1.54
CUX1P39880 SETP1-201ENST00000556014 845 ntBASIC5.42□□□□□ -1.54
CUX1P39880 AC106785.3-201ENST00000564064 847 ntBASIC5.42□□□□□ -1.54
CUX1P39880 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.42□□□□□ -1.54
CUX1P39880 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CUX1P39880 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CUX1P39880 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms