Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC092641.1-201ENST00000440229 772 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC9P31274 SNORD105B-201ENST00000458770 79 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXC9P31274 AC008155.2-201ENST00000464337 397 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 AC037198.2-201ENST00000478845 733 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC9P31274 HSPD1P15-201ENST00000505573 1122 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC9P31274 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXC9P31274 RANP9-201ENST00000519957 271 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.96□□□□□ -1.62
HOXC9P31274 AP003066.2-201ENST00000529375 555 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 AC069240.1-201ENST00000548774 375 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.96□□□□□ -1.62
HOXC9P31274 YWHAZP1-201ENST00000556286 722 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC9P31274 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXC9P31274 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXC9P31274 AL122125.1-201ENST00000616999 600 ntBASIC4.96□□□□□ -1.62
HOXC9P31274 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC9P31274 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC9P31274 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
HOXC9P31274 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXC9P31274 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC9P31274 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.95□□□□□ -1.62
HOXC9P31274 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC9P31274 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HOXC9P31274 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC9P31274 RNU1-108P-201ENST00000362556 161 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 MIR483-201ENST00000385070 76 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.95□□□□□ -1.62
HOXC9P31274 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXC9P31274 AC005189.1-201ENST00000431286 310 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 AC104978.1-201ENST00000449387 391 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 HMGB1P26-201ENST00000452520 628 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 TVP23BP2-201ENST00000455082 615 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC9P31274 RPS4XP10-201ENST00000465034 731 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 STMN1P2-201ENST00000508435 439 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 SCARNA1-201ENST00000517138 166 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 AC087894.1-201ENST00000538359 518 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.95□□□□□ -1.62
HOXC9P31274 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXC9P31274 AC106734.1-201ENST00000568646 663 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.95□□□□□ -1.62
HOXC9P31274 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXC9P31274 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXC9P31274 AC010591.1-201ENST00000603941 649 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 AC007275.1-201ENST00000621243 671 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 AC145207.9-201ENST00000623802 325 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 AC099654.9-201ENST00000637055 678 ntBASIC4.95□□□□□ -1.62
HOXC9P31274 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC9P31274 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXC9P31274 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC9P31274 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.95□□□□□ -1.62
HOXC9P31274 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
HOXC9P31274 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXC9P31274 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC9P31274 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXC9P31274 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXC9P31274 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.94□□□□□ -1.62
HOXC9P31274 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXC9P31274 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXC9P31274 AP000568.1-201ENST00000282964 442 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 RNU6-666P-201ENST00000363499 107 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXC9P31274 RNA5SP424-201ENST00000390988 115 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 HMGB1P13-201ENST00000406019 642 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 RNA5SP146-201ENST00000410743 123 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 UBE2V1P11-201ENST00000411559 285 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 MTCO3P4-201ENST00000419236 787 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AC245054.1-201ENST00000420944 258 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 OR6K4P-201ENST00000423179 955 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.94□□□□□ -1.62
HOXC9P31274 AC097713.2-201ENST00000430199 356 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AC073063.1-201ENST00000434352 607 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXC9P31274 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.94□□□□□ -1.62
HOXC9P31274 CYCSP35-201ENST00000451978 304 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AC002553.2-201ENST00000453217 340 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 RPL21P18-201ENST00000469899 480 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AC006511.1-201ENST00000470614 315 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXC9P31274 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.94□□□□□ -1.62
HOXC9P31274 IGKV2-23-201ENST00000518729 323 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.94□□□□□ -1.62
HOXC9P31274 CD24P2-201ENST00000565486 219 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AL031985.2-201ENST00000600955 480 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AL355816.2-201ENST00000610049 647 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AC243654.2-201ENST00000612843 443 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 VN1R9P-201ENST00000614184 867 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 AL121890.2-201ENST00000617644 465 ntBASIC4.94□□□□□ -1.62
HOXC9P31274 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXC9P31274 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
HOXC9P31274 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
HOXC9P31274 AC093849.1-201ENST00000563631 2209 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 MTND5P1-201ENST00000445440 1375 ntBASIC4.93□□□□□ -1.62
HOXC9P31274 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms