Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX1P28360 AP003115.1-201ENST00000569849 463 ntBASIC6.08□□□□□ -1.44
MSX1P28360 MIR3154-201ENST00000577829 84 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 MIR5583-1-201ENST00000580941 59 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AL031666.3-201ENST00000609320 1006 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AC245517.5-201ENST00000611529 162 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AC061999.1-201ENST00000624454 177 ntBASIC6.08□□□□□ -1.44
MSX1P28360 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 TATDN2P3-201ENST00000452855 3665 ntBASIC6.08□□□□□ -1.44
MSX1P28360 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX1P28360 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX1P28360 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.07□□□□□ -1.44
MSX1P28360 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.07□□□□□ -1.44
MSX1P28360 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.07□□□□□ -1.44
MSX1P28360 RNU1-65P-201ENST00000363919 148 ntBASIC6.07□□□□□ -1.44
MSX1P28360 RNA5SP85-201ENST00000365378 119 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AL359694.1-201ENST00000403247 604 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AL391417.1-201ENST00000404100 426 ntBASIC6.07□□□□□ -1.44
MSX1P28360 MIR1282-201ENST00000408865 101 ntBASIC6.07□□□□□ -1.44
MSX1P28360 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX1P28360 RNU4-25P-201ENST00000410569 230 ntBASIC6.07□□□□□ -1.44
MSX1P28360 RN7SKP188-201ENST00000410789 317 ntBASIC6.07□□□□□ -1.44
MSX1P28360 RPS17P17-201ENST00000419392 409 ntBASIC6.07□□□□□ -1.44
MSX1P28360 PDSS1P1-201ENST00000422953 1114 ntBASIC6.07□□□□□ -1.44
MSX1P28360 RAC1P6-201ENST00000423911 575 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX1P28360 GAPDHP37-201ENST00000442317 968 ntBASIC6.07□□□□□ -1.44
MSX1P28360 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX1P28360 TRBV26-201ENST00000456572 344 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AKR1D1P1-201ENST00000457236 936 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC099340.1-201ENST00000475247 599 ntBASIC6.07□□□□□ -1.44
MSX1P28360 SIAH1P1-201ENST00000479411 923 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC068781.1-201ENST00000488231 618 ntBASIC6.07□□□□□ -1.44
MSX1P28360 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 AC063943.2-201ENST00000495697 534 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX1P28360 VN1R104P-201ENST00000505115 1009 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX1P28360 AC116655.1-201ENST00000508324 901 ntBASIC6.07□□□□□ -1.44
MSX1P28360 Y_RNA.721-201ENST00000517207 102 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC078899.1-201ENST00000521432 1185 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX1P28360 OR4P1P-201ENST00000530808 1136 ntBASIC6.07□□□□□ -1.44
MSX1P28360 GNAI2P1-201ENST00000541815 315 ntBASIC6.07□□□□□ -1.44
MSX1P28360 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.07□□□□□ -1.44
MSX1P28360 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX1P28360 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX1P28360 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC6.07□□□□□ -1.44
MSX1P28360 AC012175.1-201ENST00000603755 531 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC092747.3-201ENST00000603769 301 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC016727.2-201ENST00000603988 621 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC018462.2-201ENST00000605375 395 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AL591167.1-201ENST00000607321 456 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC133644.2-201ENST00000608142 540 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AL627230.1-201ENST00000613077 211 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC010378.1-201ENST00000619270 362 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AL354718.1-201ENST00000619764 589 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC089999.3-201ENST00000622440 577 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AL122023.1-201ENST00000622847 530 ntBASIC6.07□□□□□ -1.44
MSX1P28360 U6.114-201ENST00000636407 96 ntBASIC6.07□□□□□ -1.44
MSX1P28360 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 NLRP3P1-201ENST00000622303 1785 ntBASIC6.07□□□□□ -1.44
MSX1P28360 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.07□□□□□ -1.44
MSX1P28360 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
MSX1P28360 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.07□□□□□ -1.44
MSX1P28360 AC090220.1-201ENST00000593078 1699 ntBASIC6.07□□□□□ -1.44
MSX1P28360 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
MSX1P28360 AC105114.1-201ENST00000624795 1862 ntBASIC6.07□□□□□ -1.44
MSX1P28360 AC005592.1-201ENST00000566527 1640 ntBASIC6.07□□□□□ -1.44
MSX1P28360 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 AC025809.2-201ENST00000625085 1802 ntBASIC6.06□□□□□ -1.44
MSX1P28360 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.06□□□□□ -1.44
MSX1P28360 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
MSX1P28360 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
MSX1P28360 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms