Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNA5SP366-201ENST00000365454 123 ntBASIC4.22□□□□□ -1.73
MSH3P20585 MIR93-201ENST00000385024 80 ntBASIC4.22□□□□□ -1.73
MSH3P20585 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 AC027644.1-201ENST00000419595 298 ntBASIC4.22□□□□□ -1.73
MSH3P20585 MTCO2P21-201ENST00000419780 677 ntBASIC4.22□□□□□ -1.73
MSH3P20585 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH3P20585 AC009263.1-201ENST00000441193 1239 ntBASIC4.22□□□□□ -1.73
MSH3P20585 RPS26P30-201ENST00000443431 335 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH3P20585 NAP1L1P3-201ENST00000462291 880 ntBASIC4.22□□□□□ -1.73
MSH3P20585 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 HPRT1P2-201ENST00000505250 544 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH3P20585 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 AC008958.1-201ENST00000511047 682 ntBASIC4.22□□□□□ -1.73
MSH3P20585 RNA5SP519-201ENST00000516480 119 ntBASIC4.22□□□□□ -1.73
MSH3P20585 RNA5SP73-201ENST00000516744 108 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH3P20585 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH3P20585 DUXAP5-201ENST00000529668 529 ntBASIC4.22□□□□□ -1.73
MSH3P20585 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH3P20585 AC009097.3-201ENST00000563557 1018 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC023575.1-201ENST00000580510 358 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.22□□□□□ -1.73
MSH3P20585 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.22□□□□□ -1.73
MSH3P20585 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH3P20585 GAS5-AS1-201ENST00000602767 694 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC008638.3-201ENST00000603341 463 ntBASIC4.22□□□□□ -1.73
MSH3P20585 BNIP3P4-201ENST00000604946 565 ntBASIC4.22□□□□□ -1.73
MSH3P20585 ARF4P1-201ENST00000605447 541 ntBASIC4.22□□□□□ -1.73
MSH3P20585 MIR432-201ENST00000606207 94 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.22□□□□□ -1.73
MSH3P20585 AL445423.1-201ENST00000609941 536 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC009237.15-201ENST00000610252 501 ntBASIC4.22□□□□□ -1.73
MSH3P20585 FAM27D1-201ENST00000612308 341 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH3P20585 Z99129.2-201ENST00000619967 314 ntBASIC4.22□□□□□ -1.73
MSH3P20585 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 AL445363.3-201ENST00000623080 671 ntBASIC4.22□□□□□ -1.73
MSH3P20585 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.22□□□□□ -1.73
MSH3P20585 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
MSH3P20585 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 MTND4P8-201ENST00000514997 1362 ntBASIC4.22□□□□□ -1.73
MSH3P20585 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 AC096656.1-201ENST00000623826 1364 ntBASIC4.22□□□□□ -1.73
MSH3P20585 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
MSH3P20585 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.21□□□□□ -1.73
MSH3P20585 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
MSH3P20585 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.21□□□□□ -1.73
MSH3P20585 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
MSH3P20585 USP9YP4-201ENST00000424401 1745 ntBASIC4.21□□□□□ -1.73
MSH3P20585 AC009229.4-201ENST00000623854 1947 ntBASIC4.21□□□□□ -1.74
MSH3P20585 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSH3P20585 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
MSH3P20585 RNU6-1339P-201ENST00000363574 91 ntBASIC4.21□□□□□ -1.74
MSH3P20585 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.21□□□□□ -1.74
MSH3P20585 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSH3P20585 TAS2R15P-201ENST00000390674 928 ntBASIC4.21□□□□□ -1.74
MSH3P20585 RNU6-1242P-201ENST00000391052 103 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.21□□□□□ -1.74
MSH3P20585 MTND2P16-201ENST00000419987 799 ntBASIC4.21□□□□□ -1.74
MSH3P20585 CHIAP3-201ENST00000423668 1133 ntBASIC4.21□□□□□ -1.74
MSH3P20585 C4BPAP2-201ENST00000428434 478 ntBASIC4.21□□□□□ -1.74
MSH3P20585 CETN4P-201ENST00000432407 469 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AC084290.1-201ENST00000434995 374 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC4.21□□□□□ -1.74
MSH3P20585 AL929288.2-201ENST00000446368 407 ntBASIC4.21□□□□□ -1.74
MSH3P20585 DNAJC19P8-201ENST00000452887 259 ntBASIC4.21□□□□□ -1.74
MSH3P20585 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC4.21□□□□□ -1.74
MSH3P20585 UQCRHP4-201ENST00000471686 272 ntBASIC4.21□□□□□ -1.74
MSH3P20585 RPS29P19-201ENST00000479709 171 ntBASIC4.21□□□□□ -1.74
MSH3P20585 MTCO3P15-201ENST00000526563 574 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AC124293.1-201ENST00000530034 493 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AC023538.1-201ENST00000534576 736 ntBASIC4.21□□□□□ -1.74
MSH3P20585 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSH3P20585 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC4.21□□□□□ -1.74
MSH3P20585 OR4U1P-201ENST00000554958 912 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.21□□□□□ -1.74
MSH3P20585 MTND3P12-201ENST00000559068 328 ntBASIC4.21□□□□□ -1.74
MSH3P20585 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
MSH3P20585 EIF1P6-201ENST00000600054 334 ntBASIC4.21□□□□□ -1.74
MSH3P20585 ELOCP35-201ENST00000604289 336 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AC009948.4-201ENST00000604692 675 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AC004908.3-201ENST00000610248 625 ntBASIC4.21□□□□□ -1.74
MSH3P20585 MIR378J-201ENST00000611988 109 ntBASIC4.21□□□□□ -1.74
MSH3P20585 VN1R74P-201ENST00000613259 503 ntBASIC4.21□□□□□ -1.74
MSH3P20585 MLECP1-201ENST00000615893 709 ntBASIC4.21□□□□□ -1.74
MSH3P20585 AP002791.1-201ENST00000623291 381 ntBASIC4.21□□□□□ -1.74
MSH3P20585 UGP2-231ENST00000627474 264 ntTSL 5 BASIC4.21□□□□□ -1.74
MSH3P20585 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.21□□□□□ -1.74
MSH3P20585 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms