Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 USP9YP13-201ENST00000417797 480 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AL451074.3-201ENST00000437709 472 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC092170.1-201ENST00000440211 356 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 EEF1B2P6-201ENST00000445713 673 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 RPL31P15-201ENST00000449770 338 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AL450023.1-201ENST00000450868 751 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC007998.1-201ENST00000474156 672 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AP000797.1-201ENST00000478870 387 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC022447.3-201ENST00000506865 495 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 IGHVII-60-1-201ENST00000519079 256 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 NRBF2P4-201ENST00000520874 850 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 OR4C2P-201ENST00000530855 1064 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC005084.1-201ENST00000605160 304 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 BNIP3P10-201ENST00000605360 577 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AL136295.6-201ENST00000610486 658 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 MIR6778-201ENST00000617912 73 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 MIR1321-201ENST00000637766 79 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC092162.3-201ENST00000624511 1624 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 AC093591.2-201ENST00000565254 3843 ntBASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC39Q9UFE4 MTND5P1-201ENST00000445440 1375 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC133552.1-201ENST00000569988 4007 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC011447.7-201ENST00000624228 1590 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC007996.1-201ENST00000620414 2821 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 RNU6-1122P-201ENST00000384449 107 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 RNA5SP284-201ENST00000384547 118 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 GSTA9P-201ENST00000406231 611 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 ZNF90P2-204ENST00000419323 1075 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC104333.2-201ENST00000422630 192 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 MTND6P12-201ENST00000428247 522 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC018644.1-201ENST00000429934 551 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 TAAR7P-201ENST00000436141 242 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 OR6D1P-201ENST00000436165 939 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 HMGB1P5-202ENST00000451497 985 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AL033528.1-201ENST00000453780 140 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 OFD1P4Y-201ENST00000455273 1179 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 HMGN1P9-201ENST00000515212 298 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 MTCO2P4-201ENST00000517968 247 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 ARL2BPP5-201ENST00000523141 481 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AP002748.2-201ENST00000528671 348 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC027026.1-201ENST00000532323 742 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 NACA-211ENST00000548563 827 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 AC012616.1-201ENST00000600294 197 ntBASIC6.19□□□□□ -1.42
CCDC39Q9UFE4 MEMO1P5-201ENST00000604810 406 ntBASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms