Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AL355615.1-201ENST00000406187 641 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 RNU2-71P-201ENST00000411395 189 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC011933.1-201ENST00000413334 321 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC016712.1-201ENST00000431088 378 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AL512326.1-201ENST00000443050 721 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 GXYLT1P1-201ENST00000446657 490 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC116533.1-201ENST00000459748 321 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 RPS27AP17-201ENST00000463344 455 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 RPL9P32-201ENST00000464118 620 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC011276.1-201ENST00000469688 323 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 PRDX3P4-201ENST00000470828 747 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC068305.1-201ENST00000497406 726 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 RNU5A-7P-201ENST00000515979 116 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC010476.1-201ENST00000519111 851 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC090151.1-201ENST00000520784 730 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 VN1R74P-201ENST00000613259 503 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 RMST_9.1-201ENST00000619945 193 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC068880.4-201ENST00000623082 495 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AL512506.2-201ENST00000624472 458 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 AC140479.6-201ENST00000633535 357 ntBASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.68□□□□□ -1.5
CHMP4AQ9BY43 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 RNU1-63P-201ENST00000383902 164 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 U3.22-201ENST00000391120 215 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 RN7SKP199-201ENST00000410325 305 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 RAB28P1-201ENST00000411517 641 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 COX6CP17-201ENST00000421389 185 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 HMGB1P38-201ENST00000490557 577 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 RPS6P4-201ENST00000494693 758 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AC025674.1-201ENST00000507074 324 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 RNA5SP135-201ENST00000517019 125 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AP004371.1-201ENST00000525240 214 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AC092474.3-201ENST00000603022 568 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AL390816.3-201ENST00000604527 1066 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 HMGN2P28-201ENST00000606102 262 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AP002360.3-201ENST00000607673 710 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AC109454.4-201ENST00000623411 649 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 AP001350.1-201ENST00000601906 1524 ntBASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP4AQ9BY43 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AC234064.1-201ENST00000436312 247 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AL096829.2-201ENST00000446582 742 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 MTCO3P35-201ENST00000485582 781 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 OR5H5P-201ENST00000503164 928 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AL592156.1-201ENST00000508758 304 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AC106806.2-201ENST00000509365 500 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 ZNF705CP-201ENST00000530515 889 ntBASIC5.66□□□□□ -1.5
CHMP4AQ9BY43 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms