Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC119744.1-201ENST00000454746 1715 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC025263.3-201ENST00000622965 1396 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC106754.1-201ENST00000562632 1513 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RNA5SP22-201ENST00000365393 109 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 MIR195-201ENST00000385194 87 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 OR8G2P-201ENST00000412796 908 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 MTCYBP15-201ENST00000433123 1127 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 BMS1P19-201ENST00000433925 393 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 MTCO1P53-201ENST00000441633 699 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AL031313.1-201ENST00000448435 256 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RPL5P32-201ENST00000454085 879 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RPL23AP81-201ENST00000455252 467 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RPL7P22-201ENST00000466005 733 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC073522.1-201ENST00000483312 377 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC023050.1-201ENST00000498198 304 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC091860.1-201ENST00000505723 432 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 HMGB3P13-201ENST00000511263 607 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC108064.1-201ENST00000513791 460 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RNA5SP73-201ENST00000516744 108 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RN7SKP283-201ENST00000517197 270 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC090151.1-201ENST00000520784 730 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 MTCO1P49-201ENST00000523429 802 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AP001372.4-201ENST00000524889 472 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 MTCO1P40-201ENST00000574371 625 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 MIR4666A-201ENST00000580160 79 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RN7SL339P-201ENST00000580597 296 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC110743.1-201ENST00000584870 478 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC008759.1-201ENST00000589783 983 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AL050303.3-201ENST00000613704 284 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AC074029.4-201ENST00000624796 1859 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 AL592182.3-201ENST00000642132 3304 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 Z82217.1-201ENST00000625157 8149 ntBASIC4.13□□□□□ -1.75
CCDC3Q9BQI4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC114546.3-201ENST00000623582 1734 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 RPL21P65-201ENST00000406094 466 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 MTATP6P31-201ENST00000406985 692 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 RN7SKP199-201ENST00000410325 305 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 RN7SKP202-201ENST00000410439 330 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC234782.4-201ENST00000417646 1048 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 MTND4P3-201ENST00000417829 541 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 UBTFL3-201ENST00000418934 1024 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC027644.1-201ENST00000419595 298 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AL009174.1-201ENST00000426577 416 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 RPL21P110-201ENST00000433345 446 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 MTND1P33-201ENST00000446251 917 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC005002.1-201ENST00000447458 540 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC244505.3-201ENST00000454598 187 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 DUXAP8-207ENST00000456786 622 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 UBTFL6-201ENST00000477929 1024 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 RN7SL132P-201ENST00000478131 296 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC108729.1-201ENST00000487812 947 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC023632.4-201ENST00000517783 191 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC091163.3-201ENST00000518269 1144 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 MTND2P32-201ENST00000521584 1038 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 IGJP1-201ENST00000522682 475 ntBASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC3Q9BQI4 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms