Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AP001033.2-201ENST00000609701 1003 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 MIR7151-201ENST00000617477 60 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AL031985.3-201ENST00000565390 2449 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS39Q96JC1 MTND5P28-201ENST00000438005 1594 ntBASIC4.06□□□□□ -1.76
VPS39Q96JC1 AL592494.2-201ENST00000425455 1548 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS39Q96JC1 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 SEC63P2-201ENST00000503863 1939 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 MTND4P8-201ENST00000514997 1362 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 MTND5P11-201ENST00000511037 1812 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 SEPT7P7-201ENST00000420492 1301 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC016716.1-201ENST00000265882 708 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 RNU1-32P-201ENST00000363937 159 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 RNA5SP366-201ENST00000365454 123 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 MIR1250-201ENST00000408098 113 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 PNRC2P1-201ENST00000423940 420 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AL390879.2-203ENST00000426943 1121 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 MTATP6P11-201ENST00000428071 670 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 HMGB1P45-201ENST00000435986 653 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 MTND4P15-201ENST00000437913 1033 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC233982.1-201ENST00000451247 436 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 RPL38P1-201ENST00000460914 211 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 NCOR1P1-202ENST00000486162 291 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 HPRT1P2-201ENST00000505250 544 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 RAB9BP1-201ENST00000519581 626 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 OR4R3P-201ENST00000525084 838 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC022968.1-201ENST00000567372 442 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC025627.2-201ENST00000576220 160 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 MIR4277-201ENST00000578298 84 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 MIR4644-201ENST00000579929 84 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC091488.1-201ENST00000604239 660 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS39Q96JC1 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC048347.1-201ENST00000624621 427 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 FRG1DP-201ENST00000635586 771 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 AC091948.2-201ENST00000636510 279 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
VPS39Q96JC1 SAGE4P-201ENST00000442271 3381 ntBASIC4.05□□□□□ -1.76
VPS39Q96JC1 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS39Q96JC1 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS39Q96JC1 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS39Q96JC1 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS39Q96JC1 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS39Q96JC1 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 FAM3C2-201ENST00000312214 681 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 MIR383-201ENST00000362257 73 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 RNU6-1243P-201ENST00000364028 107 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 SNORD6-201ENST00000365444 73 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 U3.22-201ENST00000391120 215 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC069218.2-201ENST00000411665 344 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 RPL23AP26-201ENST00000412728 464 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC244098.2-201ENST00000422068 99 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC093698.1-201ENST00000423843 571 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC005517.2-201ENST00000424673 553 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 RPL18P10-201ENST00000425606 538 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 MORF4L1P7-201ENST00000426038 703 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 RPL7P4-203ENST00000430239 730 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC087650.1-201ENST00000431445 468 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 SNRPGP3-201ENST00000469405 227 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC108475.1-201ENST00000507880 950 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC109458.1-201ENST00000508858 316 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 IGKV2D-23-201ENST00000518179 286 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC034205.1-201ENST00000520621 638 ntBASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS39Q96JC1 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 156.7 ms