Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RNA5SP502-201ENST00000362694 119 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 Y_RNA.77-201ENST00000362962 107 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 TAF9BP1-201ENST00000396646 746 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 MIR921-201ENST00000401133 56 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AL109941.1-201ENST00000401925 229 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RNA5SP113-201ENST00000410486 84 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RNA5SP104-201ENST00000410989 118 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AL031779.1-201ENST00000415663 330 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC114814.2-201ENST00000419195 485 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC019178.2-201ENST00000423595 505 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 SKP1P3-201ENST00000429280 487 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 USP9YP31-201ENST00000431405 881 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 USP9YP22-201ENST00000438971 294 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 MTCYBP3-201ENST00000445588 1137 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AL935212.3-201ENST00000450729 284 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC133473.1-201ENST00000455173 299 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RPS26P28-201ENST00000470806 348 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RPL7P18-201ENST00000478965 734 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RPL7AP10-201ENST00000481016 791 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 DYNLL1P6-201ENST00000503440 264 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RNA5SP446-201ENST00000515955 82 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 RN7SKP276-201ENST00000516242 268 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 UBE2NP1-201ENST00000545592 458 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC068714.1-201ENST00000559623 800 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC105129.1-201ENST00000560250 297 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 MIR3915-201ENST00000578518 97 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC068790.5-201ENST00000602741 355 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AL391358.1-201ENST00000605342 190 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC020634.1-201ENST00000608701 549 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AL353726.1-201ENST00000614041 1000 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC090510.2-201ENST00000617465 629 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC068870.2-201ENST00000620635 389 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC015726.3-201ENST00000624501 418 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 AL391684.1-202ENST00000641293 1636 ntBASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.27□□□□□ -1.73
CLIP4Q8N3C7 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 AC005539.1-201ENST00000443768 1479 ntBASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 RNU6-1200P-201ENST00000384162 107 ntBASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 Y_RNA.560-201ENST00000384689 102 ntBASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 MIR513A2-201ENST00000385249 127 ntBASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 AL645927.1-201ENST00000396783 406 ntBASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 GSTA8P-201ENST00000404253 637 ntBASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 MOB4-205ENST00000409916 829 ntTSL 3 BASIC4.26□□□□□ -1.73
CLIP4Q8N3C7 RNA5SP80-201ENST00000410475 111 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms