Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA1P49639 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC3.94□□□□□ -1.78
HOXA1P49639 AC007225.2-201ENST00000562529 256 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA1P49639 AL360157.1-201ENST00000565962 87 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 AC141257.3-201ENST00000572906 215 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 AC012146.2-201ENST00000576545 416 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 MIR4999-201ENST00000585029 91 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXA1P49639 PSMA6P4-201ENST00000603247 718 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 ELOCP34-201ENST00000604436 327 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 AL163642.2-201ENST00000604722 1019 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXA1P49639 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXA1P49639 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA1P49639 AC009090.3-201ENST00000616553 565 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 SNORA11.6-201ENST00000619030 128 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA1P49639 AC007494.3-201ENST00000624660 743 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 CR392039.4-201ENST00000624968 501 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
HOXA1P49639 AL049767.1-202ENST00000637826 242 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 AC068137.4-201ENST00000638485 296 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXA1P49639 AC007529.1-201ENST00000418574 2178 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXA1P49639 AL451142.2-201ENST00000429076 2090 ntBASIC3.94□□□□□ -1.78
HOXA1P49639 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA1P49639 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXA1P49639 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA1P49639 PHKBP1-201ENST00000450951 1951 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
HOXA1P49639 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
HOXA1P49639 AL589647.1-201ENST00000402485 466 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.93□□□□□ -1.78
HOXA1P49639 HSFY4P-201ENST00000415994 1181 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 AC007394.1-201ENST00000421941 531 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
HOXA1P49639 DDX39BP1-205ENST00000422507 192 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA1P49639 NPM1P24-201ENST00000428039 894 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 ELOCP18-201ENST00000434209 337 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC008072.1-201ENST00000434254 824 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 YWHAZP8-201ENST00000436935 731 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXA1P49639 AL117351.1-201ENST00000438864 766 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AL391987.1-201ENST00000441025 200 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 OR7E125P-201ENST00000443450 846 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 KATNBL1P3-201ENST00000443475 909 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA1P49639 MTCYBP3-201ENST00000445588 1137 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AL606662.1-201ENST00000445763 553 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA1P49639 IFNWP4-201ENST00000453148 294 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 AL354710.1-201ENST00000453641 246 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC3.93□□□□□ -1.78
HOXA1P49639 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA1P49639 RPS15AP1-201ENST00000457423 391 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA1P49639 RN7SL558P-201ENST00000497468 299 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 SETP14-201ENST00000497538 873 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA1P49639 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA1P49639 USP9YP5-201ENST00000511770 630 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC109445.1-201ENST00000512356 383 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA1P49639 AC125611.1-201ENST00000549563 229 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 AC087477.6-201ENST00000559595 843 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA1P49639 AGGF1P8-201ENST00000562979 1000 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXA1P49639 TVP23CP2-201ENST00000571473 623 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 SNORA74C-1-201ENST00000580726 201 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC090616.2-202ENST00000584248 222 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 AC095055.1-201ENST00000603472 1113 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC010738.1-201ENST00000604970 987 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC010200.2-201ENST00000605098 235 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA1P49639 MIR6768-201ENST00000610734 72 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC008083.4-201ENST00000615076 444 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC091931.1-201ENST00000623488 728 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC124312.6-202ENST00000623624 418 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 AC139792.2-201ENST00000624218 587 ntBASIC3.93□□□□□ -1.78
HOXA1P49639 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA1P49639 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA1P49639 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA1P49639 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
HOXA1P49639 CASC19-264ENST00000641912 1184 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms