Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.93□□□□□ -1.78
SOX3P41225 AC027644.1-201ENST00000419595 298 ntBASIC3.93□□□□□ -1.78
SOX3P41225 NANOGP5-201ENST00000424456 877 ntBASIC3.93□□□□□ -1.78
SOX3P41225 NPM1P24-201ENST00000428039 894 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.93□□□□□ -1.78
SOX3P41225 MTND2P5-201ENST00000432656 1006 ntBASIC3.93□□□□□ -1.78
SOX3P41225 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.93□□□□□ -1.78
SOX3P41225 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.93□□□□□ -1.78
SOX3P41225 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SOX3P41225 MTCYBP42-201ENST00000444653 1130 ntBASIC3.93□□□□□ -1.78
SOX3P41225 EEF1A1P1-201ENST00000447052 739 ntBASIC3.93□□□□□ -1.78
SOX3P41225 OFD1P3Y-201ENST00000453312 783 ntBASIC3.93□□□□□ -1.78
SOX3P41225 RPL23AP81-201ENST00000455252 467 ntBASIC3.93□□□□□ -1.78
SOX3P41225 RPL37P3-201ENST00000456825 293 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.93□□□□□ -1.78
SOX3P41225 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.93□□□□□ -1.78
SOX3P41225 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.93□□□□□ -1.78
SOX3P41225 KCTD9P2-201ENST00000512203 1013 ntBASIC3.93□□□□□ -1.78
SOX3P41225 RNU6-416P-201ENST00000516265 103 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.93□□□□□ -1.78
SOX3P41225 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
SOX3P41225 DEFB130C-202ENST00000530001 230 ntBASIC3.93□□□□□ -1.78
SOX3P41225 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SOX3P41225 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.93□□□□□ -1.78
SOX3P41225 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.93□□□□□ -1.78
SOX3P41225 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.93□□□□□ -1.78
SOX3P41225 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC3.93□□□□□ -1.78
SOX3P41225 AC115085.1-201ENST00000588924 229 ntBASIC3.93□□□□□ -1.78
SOX3P41225 BNIP3P38-201ENST00000601117 544 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AL161729.3-201ENST00000603533 673 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AC020910.2-201ENST00000603635 610 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.93□□□□□ -1.78
SOX3P41225 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.93□□□□□ -1.78
SOX3P41225 FAM27D1-201ENST00000612308 341 ntBASIC3.93□□□□□ -1.78
SOX3P41225 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.93□□□□□ -1.78
SOX3P41225 AC233309.1-201ENST00000619522 751 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.93□□□□□ -1.78
SOX3P41225 AC019278.1-201ENST00000623516 479 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AC090506.2-201ENST00000624521 419 ntBASIC3.93□□□□□ -1.78
SOX3P41225 CR392039.4-201ENST00000624968 501 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.93□□□□□ -1.78
SOX3P41225 CDRT1-208ENST00000630868 794 ntBASIC3.93□□□□□ -1.78
SOX3P41225 AC008013.2-202ENST00000637965 364 ntBASIC3.93□□□□□ -1.78
SOX3P41225 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SOX3P41225 AC027290.2-201ENST00000623210 18662 ntBASIC3.93□□□□□ -1.78
SOX3P41225 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
SOX3P41225 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.93□□□□□ -1.78
SOX3P41225 ASNSP1-204ENST00000641977 1664 ntBASIC3.93□□□□□ -1.78
SOX3P41225 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.93□□□□□ -1.78
SOX3P41225 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SOX3P41225 AC119744.1-201ENST00000454746 1715 ntBASIC3.92□□□□□ -1.78
SOX3P41225 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SOX3P41225 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SOX3P41225 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
SOX3P41225 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 AL353743.4-201ENST00000422653 1547 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SOX3P41225 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
SOX3P41225 RNA5SP513-201ENST00000364648 118 ntBASIC3.92□□□□□ -1.78
SOX3P41225 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
SOX3P41225 RNU6-178P-201ENST00000384631 104 ntBASIC3.92□□□□□ -1.78
SOX3P41225 SNORD66.1-201ENST00000391230 76 ntBASIC3.92□□□□□ -1.78
SOX3P41225 ANAPC10P1-201ENST00000395991 556 ntBASIC3.92□□□□□ -1.78
SOX3P41225 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SOX3P41225 RPS3AP25-201ENST00000411660 793 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.92□□□□□ -1.78
SOX3P41225 JKAMPP1-201ENST00000413804 919 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.92□□□□□ -1.78
SOX3P41225 AC004975.1-201ENST00000428733 208 ntBASIC3.92□□□□□ -1.78
SOX3P41225 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.92□□□□□ -1.78
SOX3P41225 COX6B1P7-201ENST00000430845 235 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.92□□□□□ -1.78
SOX3P41225 BTF3P10-201ENST00000433415 495 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 UBE2V1P5-201ENST00000440070 405 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.92□□□□□ -1.78
SOX3P41225 NUTF2P7-201ENST00000453086 375 ntBASIC3.92□□□□□ -1.78
SOX3P41225 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 RPL7P19-201ENST00000469948 618 ntBASIC3.92□□□□□ -1.78
SOX3P41225 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.92□□□□□ -1.78
SOX3P41225 RPS26P15-201ENST00000488067 348 ntBASIC3.92□□□□□ -1.78
SOX3P41225 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.92□□□□□ -1.78
SOX3P41225 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.92□□□□□ -1.78
SOX3P41225 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SOX3P41225 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.92□□□□□ -1.78
SOX3P41225 RNA5SP73-201ENST00000516744 108 ntBASIC3.92□□□□□ -1.78
SOX3P41225 snoZ278.1-201ENST00000517059 112 ntBASIC3.92□□□□□ -1.78
SOX3P41225 RN7SKP283-201ENST00000517197 270 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC3.92□□□□□ -1.78
SOX3P41225 IGJP1-201ENST00000522682 475 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AC006064.5-201ENST00000541782 248 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AL109766.1-201ENST00000555080 552 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AC025884.1-201ENST00000556034 378 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AL158211.1-201ENST00000566763 763 ntBASIC3.92□□□□□ -1.78
SOX3P41225 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.92□□□□□ -1.78
SOX3P41225 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms