Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 SOD2P1-201ENST00000396543 562 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 RPL32P23-201ENST00000397237 405 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 RN7SKP159-201ENST00000410657 292 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 CYCSP19-201ENST00000411715 316 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 MTND4P11-201ENST00000417020 1058 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 TEX41-203ENST00000420472 765 ntTSL 3 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 OR5AW1P-201ENST00000426334 1006 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 IGKV1OR9-2-201ENST00000431378 277 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 NDUFB1P1-201ENST00000435191 180 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 SKP1P1-201ENST00000438081 489 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 SNORA84-201ENST00000459229 133 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 RPL23AP12-201ENST00000467573 473 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 SAP18P1-201ENST00000512058 390 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC008011.1-201ENST00000545989 227 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AL389895.1-201ENST00000554127 252 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AL121576.1-201ENST00000556055 276 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC006130.2-201ENST00000586202 326 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC115621.1-201ENST00000604653 858 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AL451086.1-201ENST00000605596 223 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AL391834.1-201ENST00000609609 560 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AL592295.2-201ENST00000612578 206 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 RNVU1-4-201ENST00000612985 164 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC004943.3-201ENST00000624116 600 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 AC025125.1-201ENST00000624743 1922 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HLA-DMBP28068 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 CEP170P1-201ENST00000502249 4587 ntBASIC2.85□□□□□ -1.95
HLA-DMBP28068 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC2.85□□□□□ -1.95
HLA-DMBP28068 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
HLA-DMBP28068 RNF6P1-201ENST00000444889 1784 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC087565.3-202ENST00000642085 1603 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
HLA-DMBP28068 EI24P2-201ENST00000397776 1076 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL590704.1-201ENST00000402856 794 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 TCEA1P4-201ENST00000415066 844 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL392003.1-201ENST00000434394 243 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL353093.1-201ENST00000441292 436 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 Z95327.1-201ENST00000446082 482 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 BUD31P2-201ENST00000449374 300 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 RNU7-27P-201ENST00000459281 62 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 OR9M1P-201ENST00000459641 921 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC004801.2-202ENST00000463559 283 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC006511.1-201ENST00000470614 315 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AP000893.1-201ENST00000474462 794 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL139099.1-201ENST00000497398 403 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC108941.1-201ENST00000502853 530 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HLA-DMBP28068 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC034244.2-201ENST00000514668 858 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 RN7SKP209-201ENST00000516888 304 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 SEC11B-201ENST00000518383 499 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 OR5AP1P-201ENST00000529730 940 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 MTND5P21-201ENST00000531961 522 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC008083.2-201ENST00000546707 476 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 HSPE1P5-201ENST00000561489 272 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AC107982.3-201ENST00000584957 985 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 SNORA62.6-201ENST00000606322 83 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL354760.1-201ENST00000608357 643 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL354798.1-201ENST00000622505 329 ntBASIC2.84□□□□□ -1.95
HLA-DMBP28068 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
HLA-DMBP28068 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
HLA-DMBP28068 AL122126.1-201ENST00000546905 1318 ntBASIC2.84□□□□□ -1.96
HLA-DMBP28068 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC2.84□□□□□ -1.96
HLA-DMBP28068 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.84□□□□□ -1.96
HLA-DMBP28068 SYT14P1-202ENST00000600441 1448 ntBASIC2.84□□□□□ -1.96
HLA-DMBP28068 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.96
HLA-DMBP28068 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
HLA-DMBP28068 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HLA-DMBP28068 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HLA-DMBP28068 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HLA-DMBP28068 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms