Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC020916.2-201ENST00000591242 360 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AC010620.2-201ENST00000600135 313 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.77□□□□□ -1.49
COL8A1P27658 BBIP1P1-201ENST00000602999 279 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AC004832.4-201ENST00000608952 331 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC5.77□□□□□ -1.49
COL8A1P27658 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL8A1P27658 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL8A1P27658 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL8A1P27658 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
COL8A1P27658 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC5.76□□□□□ -1.49
COL8A1P27658 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 AC025125.1-201ENST00000624743 1922 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 CCT8P1-201ENST00000413611 1657 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 AL589993.1-201ENST00000407450 2524 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 SNORA38B-201ENST00000363524 131 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 RNU6-82P-201ENST00000363970 107 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 Y_RNA.274-201ENST00000364714 101 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 RNU6-657P-201ENST00000383904 107 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AL157702.1-201ENST00000398764 426 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC110754.1-201ENST00000399740 601 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 RNU6-1050P-201ENST00000410388 107 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 RNU2-14P-201ENST00000411053 191 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 BX323014.1-201ENST00000412876 237 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC244452.1-201ENST00000413798 141 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.76□□□□□ -1.49
COL8A1P27658 AL451139.1-201ENST00000434718 346 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AL353752.1-201ENST00000454946 260 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.76□□□□□ -1.49
COL8A1P27658 AC008526.1-201ENST00000509149 338 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 RNA5SP206-201ENST00000516703 121 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC120036.3-201ENST00000517826 292 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC5.76□□□□□ -1.49
COL8A1P27658 AC068446.3-201ENST00000555285 382 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC084783.1-201ENST00000565846 910 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 CTSLP2-201ENST00000580501 394 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC012433.1-201ENST00000588916 398 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.76□□□□□ -1.49
COL8A1P27658 AL355365.1-201ENST00000616480 294 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 MIR6811-201ENST00000620409 58 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC073488.9-201ENST00000631601 754 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 AC027575.3-201ENST00000583058 2747 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 HDAC1P2-201ENST00000453661 1398 ntBASIC5.76□□□□□ -1.49
COL8A1P27658 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
COL8A1P27658 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL8A1P27658 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC5.76□□□□□ -1.49
COL8A1P27658 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC5.75□□□□□ -1.49
COL8A1P27658 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
COL8A1P27658 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL8A1P27658 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL8A1P27658 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL8A1P27658 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL8A1P27658 MED6-212ENST00000615788 1700 ntTSL 5 BASIC5.75□□□□□ -1.49
COL8A1P27658 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL8A1P27658 SNORA74A-201ENST00000364089 198 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms