Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 COL11A2P1-205ENST00000441798 676 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 RPL23AP60-201ENST00000450011 454 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC7.04□□□□□ -1.28
COL9A1P20849 OR2A1-AS1-202ENST00000467944 422 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC7.04□□□□□ -1.28
COL9A1P20849 RNU6-1278P-201ENST00000516130 107 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 RNA5SP34-201ENST00000516887 130 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC7.04□□□□□ -1.28
COL9A1P20849 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC7.04□□□□□ -1.28
COL9A1P20849 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC7.04□□□□□ -1.28
COL9A1P20849 OTX2-203ENST00000554559 715 ntTSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC7.04□□□□□ -1.28
COL9A1P20849 AC008521.1-201ENST00000587471 187 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 AL359547.2-201ENST00000615810 418 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 AP005212.3-201ENST00000619964 528 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 STK32B-207ENST00000512636 3272 ntTSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC7.04□□□□□ -1.28
COL9A1P20849 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC7.04□□□□□ -1.28
COL9A1P20849 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
COL9A1P20849 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC7.03□□□□□ -1.28
COL9A1P20849 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC7.03□□□□□ -1.28
COL9A1P20849 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC7.03□□□□□ -1.28
COL9A1P20849 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
COL9A1P20849 GMFG-201ENST00000253054 616 ntTSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 Y_RNA.269-201ENST00000364685 89 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 SNORA23-201ENST00000365128 182 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 SNORA56-201ENST00000383966 129 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 RNU6-1117P-201ENST00000384525 104 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 RNU6-225P-201ENST00000384613 103 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 MIR625-201ENST00000385047 85 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 DPPA2P3-201ENST00000411853 655 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 OSTCP4-201ENST00000424397 449 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 UBE2D3P2-201ENST00000424409 445 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 UBE2V1P4-201ENST00000425374 344 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 ANKRD54P1-201ENST00000433115 471 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 OR2AQ1P-201ENST00000451972 200 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 RPL36AP13-201ENST00000457490 317 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 AC087385.1-201ENST00000475062 312 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 AC069499.1-201ENST00000489433 509 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC7.03□□□□□ -1.28
COL9A1P20849 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC7.03□□□□□ -1.28
COL9A1P20849 RNA5SP271-201ENST00000516700 88 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 AC034114.1-201ENST00000520293 285 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC7.03□□□□□ -1.28
COL9A1P20849 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC7.03□□□□□ -1.28
COL9A1P20849 AC073488.6-201ENST00000632293 754 ntBASIC7.03□□□□□ -1.28
COL9A1P20849 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.03□□□□□ -1.28
COL9A1P20849 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC7.03□□□□□ -1.28
COL9A1P20849 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL9A1P20849 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL9A1P20849 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL9A1P20849 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL9A1P20849 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.02□□□□□ -1.29
COL9A1P20849 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC7.02□□□□□ -1.29
COL9A1P20849 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC7.02□□□□□ -1.29
COL9A1P20849 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL9A1P20849 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL9A1P20849 DGKB-206ENST00000407950 3651 ntTSL 5 BASIC7.02□□□□□ -1.29
COL9A1P20849 AC026951.1-201ENST00000559530 2459 ntBASIC7.02□□□□□ -1.29
COL9A1P20849 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL9A1P20849 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL9A1P20849 RNU6-596P-201ENST00000365395 98 ntBASIC7.02□□□□□ -1.29
COL9A1P20849 Y_RNA.471-201ENST00000384312 102 ntBASIC7.02□□□□□ -1.29
COL9A1P20849 MIR143-201ENST00000385300 106 ntBASIC7.02□□□□□ -1.29
COL9A1P20849 RNU4-34P-201ENST00000410431 124 ntBASIC7.02□□□□□ -1.29
COL9A1P20849 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL9A1P20849 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms