Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC019193.2-201ENST00000610012 634 ntBASIC4.74□□□□□ -1.65
VPS4AQ9UN37 AC083809.1-201ENST00000615051 472 ntBASIC4.74□□□□□ -1.65
VPS4AQ9UN37 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
VPS4AQ9UN37 AC234782.5-201ENST00000617723 324 ntBASIC4.74□□□□□ -1.65
VPS4AQ9UN37 AC015908.5-201ENST00000623289 343 ntBASIC4.74□□□□□ -1.65
VPS4AQ9UN37 AC116618.1-201ENST00000634617 774 ntBASIC4.74□□□□□ -1.65
VPS4AQ9UN37 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
VPS4AQ9UN37 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS4AQ9UN37 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS4AQ9UN37 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS4AQ9UN37 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
VPS4AQ9UN37 MAPK10-320ENST00000641462 6696 ntBASIC4.74□□□□□ -1.65
VPS4AQ9UN37 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
VPS4AQ9UN37 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS4AQ9UN37 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 RNU6-582P-201ENST00000362989 107 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 RNA5SP505-201ENST00000364748 108 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 Y_RNA.311-201ENST00000365068 96 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TMSB4XP8-201ENST00000402089 135 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 SNORA77-201ENST00000408716 125 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TMSB4XP6-201ENST00000415187 135 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 P2RY10P2-201ENST00000416730 913 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TMSB4XP1-201ENST00000424567 135 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 ELOCP8-201ENST00000439309 332 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 RPS29P9-201ENST00000440360 171 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 ELOCP15-201ENST00000442090 332 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 RAB11AP1-201ENST00000442978 646 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC112498.1-201ENST00000444401 332 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AL354714.3-201ENST00000447284 493 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 MTCO2P18-201ENST00000457151 658 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC091153.1-201ENST00000466297 402 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 MTND4LP3-201ENST00000468320 276 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 SYPL1P1-201ENST00000473622 768 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC005178.1-201ENST00000508392 440 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC109471.1-201ENST00000511631 612 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 RN7SKP46-201ENST00000515942 234 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 RNU6-885P-201ENST00000516607 104 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC005868.1-201ENST00000536421 331 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AL110118.1-201ENST00000553543 400 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC115085.1-201ENST00000588924 229 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC104687.2-201ENST00000604442 342 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AL390816.3-201ENST00000604527 1066 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC010200.2-201ENST00000605098 235 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC135507.1-201ENST00000607214 561 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC006338.2-201ENST00000616864 791 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC00901.1-201ENST00000617252 152 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC092140.2-201ENST00000618027 521 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC015804.1-201ENST00000622935 435 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC010608.2-201ENST00000624830 470 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 FP325313.1-201ENST00000638228 703 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 MKKS-204ENST00000639674 192 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC093535.2-201ENST00000624769 2326 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 AC134882.1-201ENST00000603738 1676 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms