Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 AP003973.1-201ENST00000604639 691 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 HSPE1P14-201ENST00000605812 302 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AL592148.2-201ENST00000612210 372 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 SNX18P1Y-201ENST00000616231 511 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 RNU6-582P-201ENST00000362989 107 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 RNU1-130P-201ENST00000363930 160 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 RNU6-224P-201ENST00000384055 107 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 RNU6-441P-201ENST00000384545 106 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 SSXP10-201ENST00000402595 565 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AL079342.2-201ENST00000403367 482 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC073264.1-201ENST00000411508 416 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 RPL21P91-201ENST00000429231 479 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 NDUFA5P7-201ENST00000452914 242 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 snoU109.3-201ENST00000459477 145 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC053481.1-201ENST00000467217 306 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC018635.1-201ENST00000468292 1030 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC011276.1-201ENST00000469688 323 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC012158.1-204ENST00000483430 465 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 RNF138P1-201ENST00000502765 546 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC113430.1-201ENST00000506872 718 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC092747.2-201ENST00000545069 983 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 AL121834.1-201ENST00000572284 509 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 BNIP3P39-201ENST00000601077 554 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC007566.2-201ENST00000603642 413 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC024060.1-201ENST00000607052 494 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AL121652.1-201ENST00000608851 448 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC091905.2-201ENST00000623143 306 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 AC090506.2-201ENST00000624521 419 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.56□□□□□ -1.68
VPS28Q9UK41 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS28Q9UK41 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
VPS28Q9UK41 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS28Q9UK41 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS28Q9UK41 RNU1-85P-201ENST00000364127 164 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 RNA5SP509-201ENST00000364577 119 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 RNU1-63P-201ENST00000383902 164 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 SNORD116-23-201ENST00000384645 92 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 LAP3P1-201ENST00000403648 294 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 COX6CP15-201ENST00000426313 211 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 GTF2IP3-201ENST00000433887 494 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 PHBP16-201ENST00000446318 950 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC009963.2-201ENST00000453431 138 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC146507.1-201ENST00000468335 354 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 RN7SL810P-201ENST00000493031 276 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 DYNLL1P6-201ENST00000503440 264 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 RNU6-885P-201ENST00000516607 104 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC091163.3-201ENST00000518269 1144 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC021451.1-201ENST00000523498 1129 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS28Q9UK41 YWHAQP7-201ENST00000603536 658 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AL445435.1-201ENST00000604232 665 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC024933.1-201ENST00000608472 348 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC015813.4-201ENST00000610469 179 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms