Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC083899.2-201ENST00000423285 1376 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 LINC01109-201ENST00000603837 3081 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 Z73965.1-201ENST00000623412 2297 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC046144.1-201ENST00000478559 1853 ntBASIC3.96□□□□□ -1.77
LHX3Q9UBR4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 MIR93-201ENST00000385024 80 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC004022.2-201ENST00000413824 193 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 UBE2V1P6-201ENST00000430840 422 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AL512637.2-201ENST00000431287 1256 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC009263.1-201ENST00000441193 1239 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 RPS17P13-201ENST00000448974 407 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC090819.1-201ENST00000523800 1111 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 BNIP3P5-201ENST00000562290 498 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC005255.1-201ENST00000593748 216 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AL392112.1-201ENST00000605115 829 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC120053.1-201ENST00000607706 736 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC112503.2-201ENST00000609005 552 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC128687.2-201ENST00000609657 566 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AL591424.2-201ENST00000617023 128 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 FP236240.3-201ENST00000623061 327 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.96□□□□□ -1.78
LHX3Q9UBR4 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LHX3Q9UBR4 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC074029.4-201ENST00000624796 1859 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 RPS26P40-201ENST00000435209 294 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 Z74696.2-201ENST00000436514 498 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 UBE2V1P5-201ENST00000440070 405 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 DNAJC19P8-201ENST00000452887 259 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 MRPL35P4-201ENST00000453682 566 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC104689.1-201ENST00000473356 768 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 RPS3AP6-201ENST00000484430 795 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 PPM1AP1-201ENST00000502740 1135 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 MTND1P36-201ENST00000522384 936 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC092451.2-201ENST00000538746 658 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AL442163.2-201ENST00000553912 710 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AL161713.1-201ENST00000555538 145 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AP000919.1-202ENST00000581139 1264 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 MTATP6P2-201ENST00000603319 678 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC021851.1-201ENST00000608537 1082 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AL139089.1-201ENST00000620372 975 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AL354798.1-201ENST00000622505 329 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 AC106730.3-201ENST00000624568 641 ntBASIC3.95□□□□□ -1.78
LHX3Q9UBR4 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
LHX3Q9UBR4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms