Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RPL7P32-201ENST00000457119 744 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 RPS23P7-201ENST00000466210 444 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 RN7SL303P-201ENST00000469773 251 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 CYCSP28-201ENST00000534284 321 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AGGF1P8-201ENST00000562979 1000 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 MIR4789-201ENST00000577469 82 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AC013468.1-201ENST00000608680 598 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AC006338.2-201ENST00000616864 791 ntBASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
CHMP4AQ9BY43 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 HSPD1P14-201ENST00000432666 1618 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 U6.112-201ENST00000384129 70 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 UBTFL3-201ENST00000418934 1024 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 AL592293.2-201ENST00000422292 996 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 EIF1P3-201ENST00000423841 334 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 RPP40P1-201ENST00000426762 456 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 PHBP16-201ENST00000446318 950 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 DDX39BP2-208ENST00000453923 258 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 TRBV26-201ENST00000456572 344 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 UBTFL6-201ENST00000477929 1024 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 AC026414.1-201ENST00000504046 698 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 MTCYBP41-201ENST00000528913 1123 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 NIFKP8-201ENST00000560500 874 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 MTCO1P40-201ENST00000574371 625 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 AL354760.1-201ENST00000608357 643 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 MIR6891-201ENST00000618788 93 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 AC022106.2-201ENST00000620114 757 ntBASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
CHMP4AQ9BY43 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 RNU6-115P-201ENST00000364310 107 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 RNU6-921P-201ENST00000384361 107 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 USP9YP19-201ENST00000412165 485 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AL133384.1-201ENST00000412744 351 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 HMGB1P12-201ENST00000438594 598 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 TPT1P12-201ENST00000448968 492 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 DHFRP3-201ENST00000455595 559 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 OR4R2P-201ENST00000530815 597 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AC068831.4-201ENST00000556118 109 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AC113403.1-201ENST00000604910 193 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 SNORD91B-202ENST00000608459 222 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 AC140113.4-201ENST00000622087 222 ntBASIC5.69□□□□□ -1.5
CHMP4AQ9BY43 EOGT-210ENST00000615922 1931 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms