Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DBIP1-201ENST00000401435 260 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 MIR1250-201ENST00000408098 113 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RN7SKP32-201ENST00000410167 303 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RNU6-1148P-201ENST00000410992 104 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 NDUFB4P5-201ENST00000415445 361 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 FABP7P1-201ENST00000424004 391 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 OSTCP4-201ENST00000424397 449 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC005517.2-201ENST00000424673 553 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 SRIP2-201ENST00000428470 166 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AL359265.2-201ENST00000434367 631 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 LYPLA1P1-201ENST00000434514 622 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC234771.2-201ENST00000445718 597 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 KF459542.1-201ENST00000450908 553 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 CBX1P2-201ENST00000453841 458 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC234775.1-201ENST00000454247 670 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RN7SL643P-201ENST00000471845 291 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RPS15AP36-201ENST00000492022 382 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC092349.1-201ENST00000504903 310 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RNU4-49P-201ENST00000516080 140 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RNU6-1314P-201ENST00000517139 104 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 OR5BN1P-201ENST00000532955 829 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC008055.1-201ENST00000547032 609 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 LSM3P2-201ENST00000551246 273 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC090651.1-201ENST00000567865 634 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 MIR4775-201ENST00000581168 75 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC005332.4-201ENST00000592752 579 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC011500.1-201ENST00000601963 469 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC087763.1-201ENST00000603391 286 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC090948.1-201ENST00000607464 549 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC064836.2-201ENST00000609491 462 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 AC037198.3-201ENST00000616754 526 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 FRG1KP-201ENST00000623592 341 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 PABPC1P7-201ENST00000413177 1513 ntBASIC4.9□□□□□ -1.63
CCDC140Q96MF4 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC4.9□□□□□ -1.63
CCDC140Q96MF4 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 POT1-202ENST00000393329 3950 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC000374.1-201ENST00000434698 1745 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 SNORD8-201ENST00000363915 110 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RNU4-66P-201ENST00000365199 138 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RNA5SP77-201ENST00000365394 120 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 Y_RNA.373-201ENST00000365600 103 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RNU6-637P-201ENST00000384050 107 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 Y_RNA.460-201ENST00000384255 102 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 snosnR66.1-201ENST00000391095 99 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AL136372.1-201ENST00000403060 228 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 PRELID1P1-201ENST00000403549 660 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AL133260.1-201ENST00000405720 405 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC068533.1-201ENST00000418542 415 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 Z82198.3-201ENST00000421145 199 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AC018630.2-202ENST00000422992 927 ntBASIC4.89□□□□□ -1.63
CCDC140Q96MF4 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC140Q96MF4 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms