Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 SNORD81.2-201ENST00000365153 76 ntBASIC5.5□□□□□ -1.53
RNF4P78317 RNU6-359P-201ENST00000365466 108 ntBASIC5.5□□□□□ -1.53
RNF4P78317 RNA5SP211-201ENST00000365516 117 ntBASIC5.5□□□□□ -1.53
RNF4P78317 SNORA20.2-201ENST00000383922 131 ntBASIC5.5□□□□□ -1.53
RNF4P78317 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 RPS4XP8-201ENST00000402039 771 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AL356432.1-201ENST00000405809 419 ntBASIC5.5□□□□□ -1.53
RNF4P78317 MIR1203-201ENST00000408812 85 ntBASIC5.5□□□□□ -1.53
RNF4P78317 RNU2-9P-201ENST00000410194 145 ntBASIC5.5□□□□□ -1.53
RNF4P78317 RNA5SP118-201ENST00000410385 109 ntBASIC5.5□□□□□ -1.53
RNF4P78317 RNU6-1068P-201ENST00000410958 103 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC5.5□□□□□ -1.53
RNF4P78317 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.5□□□□□ -1.53
RNF4P78317 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.5□□□□□ -1.53
RNF4P78317 RPS4XP5-201ENST00000419038 768 ntBASIC5.5□□□□□ -1.53
RNF4P78317 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 BNIP3P2-201ENST00000441221 577 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AL136380.1-201ENST00000447970 162 ntBASIC5.5□□□□□ -1.53
RNF4P78317 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC5.5□□□□□ -1.53
RNF4P78317 AC144530.1-201ENST00000452862 555 ntBASIC5.5□□□□□ -1.53
RNF4P78317 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC5.5□□□□□ -1.53
RNF4P78317 AL445687.2-201ENST00000458156 728 ntBASIC5.5□□□□□ -1.53
RNF4P78317 PABPC1P3-201ENST00000469174 459 ntBASIC5.5□□□□□ -1.53
RNF4P78317 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 RPS3AP50-201ENST00000487064 803 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 AC139783.2-201ENST00000504847 1145 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.5□□□□□ -1.53
RNF4P78317 RNU6-1220P-201ENST00000517126 108 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.5□□□□□ -1.53
RNF4P78317 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.5□□□□□ -1.53
RNF4P78317 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC5.5□□□□□ -1.53
RNF4P78317 BRD9P1-201ENST00000529855 560 ntBASIC5.5□□□□□ -1.53
RNF4P78317 HPRT1P3-201ENST00000539521 576 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC243972.3-201ENST00000539655 198 ntBASIC5.5□□□□□ -1.53
RNF4P78317 LSM6P2-201ENST00000552208 177 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC078814.3-201ENST00000553036 491 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC007424.1-203ENST00000554613 687 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.5□□□□□ -1.53
RNF4P78317 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.5□□□□□ -1.53
RNF4P78317 AC018638.8-201ENST00000588755 281 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC005498.1-201ENST00000592125 465 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.5□□□□□ -1.53
RNF4P78317 AC121334.2-201ENST00000605387 271 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC090527.3-201ENST00000619041 548 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AL158801.5-201ENST00000623123 465 ntBASIC5.5□□□□□ -1.53
RNF4P78317 AC005858.4-201ENST00000623191 700 ntBASIC5.5□□□□□ -1.53
RNF4P78317 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.5□□□□□ -1.53
RNF4P78317 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 AL591135.1-201ENST00000401578 5914 ntBASIC5.5□□□□□ -1.53
RNF4P78317 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
RNF4P78317 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.49□□□□□ -1.53
RNF4P78317 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.49□□□□□ -1.53
RNF4P78317 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
RNF4P78317 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 RNU6-249P-201ENST00000363016 102 ntBASIC5.49□□□□□ -1.53
RNF4P78317 SNORA63-201ENST00000363450 132 ntBASIC5.49□□□□□ -1.53
RNF4P78317 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
RNF4P78317 SNORA69-201ENST00000383895 132 ntBASIC5.49□□□□□ -1.53
RNF4P78317 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
RNF4P78317 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC5.49□□□□□ -1.53
RNF4P78317 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.49□□□□□ -1.53
RNF4P78317 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 SLC35E1P1-201ENST00000419313 864 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 AF228730.4-201ENST00000421457 183 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AL035660.1-201ENST00000422041 222 ntBASIC5.49□□□□□ -1.53
RNF4P78317 EIF1P3-201ENST00000423841 334 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 AC079807.1-201ENST00000429993 481 ntBASIC5.49□□□□□ -1.53
RNF4P78317 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC5.49□□□□□ -1.53
RNF4P78317 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 RN7SKP288-201ENST00000516227 268 ntBASIC5.49□□□□□ -1.53
RNF4P78317 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.49□□□□□ -1.53
RNF4P78317 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 PHBP17-201ENST00000528576 541 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AP000648.1-201ENST00000529682 397 ntBASIC5.49□□□□□ -1.53
RNF4P78317 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.49□□□□□ -1.53
RNF4P78317 AP004609.2-201ENST00000532177 190 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms