Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC3.77□□□□□ -1.81
COL4A4P53420 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A4P53420 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL4A4P53420 FTX-210ENST00000603037 8347 ntTSL 5 BASIC3.77□□□□□ -1.81
COL4A4P53420 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC3.77□□□□□ -1.81
COL4A4P53420 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.76□□□□□ -1.81
COL4A4P53420 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.76□□□□□ -1.81
COL4A4P53420 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A4P53420 RNU1-89P-201ENST00000384592 164 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.76□□□□□ -1.81
COL4A4P53420 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.76□□□□□ -1.81
COL4A4P53420 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A4P53420 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.76□□□□□ -1.81
COL4A4P53420 AC099563.1-201ENST00000456086 418 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 AC084357.1-201ENST00000473404 255 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 MTND3P3-201ENST00000505004 126 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.76□□□□□ -1.81
COL4A4P53420 AC025423.2-201ENST00000537570 439 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.76□□□□□ -1.81
COL4A4P53420 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.76□□□□□ -1.81
COL4A4P53420 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.76□□□□□ -1.81
COL4A4P53420 AC016252.1-201ENST00000609721 474 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 AL732618.1-201ENST00000623251 301 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.76□□□□□ -1.81
COL4A4P53420 AL121839.2-201ENST00000565058 6943 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 NCAPGP1-201ENST00000505112 1814 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A4P53420 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A4P53420 AC087190.4-201ENST00000574616 8334 ntBASIC3.76□□□□□ -1.81
COL4A4P53420 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A4P53420 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL4A4P53420 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
COL4A4P53420 RNU6-283P-201ENST00000364788 107 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
COL4A4P53420 MTATP6P11-201ENST00000428071 670 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A4P53420 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A4P53420 RPS29P31-201ENST00000446147 164 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A4P53420 Y_RNA.638-201ENST00000459374 113 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 RN7SL504P-201ENST00000494496 287 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 FTH1P24-201ENST00000503502 462 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A4P53420 AP003168.1-201ENST00000530091 307 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 AL121576.1-201ENST00000556055 276 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 LARP7P3-201ENST00000579888 337 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A4P53420 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A4P53420 AC006539.2-201ENST00000601729 572 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC006946.3-201ENST00000609791 756 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AL162574.2-201ENST00000614618 657 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC106730.3-201ENST00000624568 641 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A4P53420 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A4P53420 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
COL4A4P53420 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC3.75□□□□□ -1.81
COL4A4P53420 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 ZNF807-201ENST00000328088 1707 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A4P53420 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A4P53420 ZNF603P-201ENST00000405613 487 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 AC097262.1-201ENST00000452559 548 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A4P53420 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A4P53420 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.75□□□□□ -1.81
COL4A4P53420 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A4P53420 AC005476.1-201ENST00000554427 397 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC034105.3-201ENST00000565294 442 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AL158211.1-201ENST00000566763 763 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC006504.3-201ENST00000586818 523 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC017076.1-201ENST00000607613 578 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AL118508.4-201ENST00000624142 1176 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC127502.3-201ENST00000636170 1206 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC099654.11-201ENST00000638857 294 ntBASIC3.75□□□□□ -1.81
COL4A4P53420 AC027290.2-201ENST00000623210 18662 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
COL4A4P53420 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC3.74□□□□□ -1.81
COL4A4P53420 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC3.74□□□□□ -1.81
COL4A4P53420 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
COL4A4P53420 FRG1CP-201ENST00000358464 769 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 RNU1-140P-201ENST00000365040 165 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL4A4P53420 RN7SKP111-201ENST00000410349 271 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 RNA5SP80-201ENST00000410475 111 ntBASIC3.74□□□□□ -1.81
COL4A4P53420 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms