Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC9P31274 OR5M7P-201ENST00000526140 972 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AC007458.1-201ENST00000542812 373 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC9P31274 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC5.01□□□□□ -1.61
HOXC9P31274 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXC9P31274 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC5.01□□□□□ -1.61
HOXC9P31274 AC034236.3-201ENST00000605999 461 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXC9P31274 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC5.01□□□□□ -1.61
HOXC9P31274 AC243312.2-201ENST00000623340 601 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 AL392088.2-201ENST00000637607 285 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC9P31274 PRO1804-201ENST00000623780 2050 ntBASIC5.01□□□□□ -1.61
HOXC9P31274 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
HOXC9P31274 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXC9P31274 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXC9P31274 AC074029.4-201ENST00000624796 1859 ntBASIC5□□□□□ -1.61
HOXC9P31274 ZNF962P-201ENST00000443465 3140 ntBASIC5□□□□□ -1.61
HOXC9P31274 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5□□□□□ -1.61
HOXC9P31274 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
HOXC9P31274 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5□□□□□ -1.61
HOXC9P31274 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5□□□□□ -1.61
HOXC9P31274 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
HOXC9P31274 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5□□□□□ -1.61
HOXC9P31274 MIR490-201ENST00000384865 128 ntBASIC5□□□□□ -1.61
HOXC9P31274 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC5□□□□□ -1.61
HOXC9P31274 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC5□□□□□ -1.61
HOXC9P31274 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5□□□□□ -1.61
HOXC9P31274 AC073387.1-201ENST00000453261 709 ntBASIC5□□□□□ -1.61
HOXC9P31274 MTATP6P14-201ENST00000455189 673 ntBASIC5□□□□□ -1.61
HOXC9P31274 AC007967.1-201ENST00000455422 1159 ntBASIC5□□□□□ -1.61
HOXC9P31274 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5□□□□□ -1.61
HOXC9P31274 HSPE1P22-201ENST00000456856 327 ntBASIC5□□□□□ -1.61
HOXC9P31274 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC5□□□□□ -1.61
HOXC9P31274 TCP11X3P-202ENST00000514289 1254 ntBASIC5□□□□□ -1.61
HOXC9P31274 SNORA31.13-201ENST00000516624 135 ntBASIC5□□□□□ -1.61
HOXC9P31274 AC008802.1-201ENST00000519121 791 ntBASIC5□□□□□ -1.61
HOXC9P31274 AC018442.3-201ENST00000523025 183 ntBASIC5□□□□□ -1.61
HOXC9P31274 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5□□□□□ -1.61
HOXC9P31274 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5□□□□□ -1.61
HOXC9P31274 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC5□□□□□ -1.61
HOXC9P31274 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5□□□□□ -1.61
HOXC9P31274 AL137849.1-201ENST00000604767 169 ntBASIC5□□□□□ -1.61
HOXC9P31274 RMST_10.1-201ENST00000616309 154 ntBASIC5□□□□□ -1.61
HOXC9P31274 AC078880.5-201ENST00000617845 421 ntBASIC5□□□□□ -1.61
HOXC9P31274 AP004607.9-201ENST00000618202 316 ntBASIC5□□□□□ -1.61
HOXC9P31274 AC099654.8-201ENST00000637757 681 ntBASIC5□□□□□ -1.61
HOXC9P31274 METTL8-218ENST00000638989 876 ntTSL 5 BASIC5□□□□□ -1.61
HOXC9P31274 METTL8-219ENST00000640734 726 ntTSL 2 BASIC5□□□□□ -1.61
HOXC9P31274 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5□□□□□ -1.61
HOXC9P31274 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC5□□□□□ -1.61
HOXC9P31274 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXC9P31274 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HOXC9P31274 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.99□□□□□ -1.61
HOXC9P31274 RNU6-532P-201ENST00000384318 107 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 MIR218-2-201ENST00000385006 110 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 RN7SKP199-201ENST00000410325 305 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 PNRC2P1-201ENST00000423940 420 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AC013262.1-201ENST00000426710 252 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 CYCSP4-201ENST00000429682 331 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.99□□□□□ -1.61
HOXC9P31274 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.99□□□□□ -1.61
HOXC9P31274 RPS3AP12-201ENST00000443616 753 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.99□□□□□ -1.61
HOXC9P31274 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HOXC9P31274 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.99□□□□□ -1.61
HOXC9P31274 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HOXC9P31274 WBP1LP4-201ENST00000505043 344 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AC108120.2-201ENST00000512973 294 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXC9P31274 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXC9P31274 AL049870.4-201ENST00000555741 486 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.99□□□□□ -1.61
HOXC9P31274 AC090877.1-201ENST00000561418 344 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HOXC9P31274 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.99□□□□□ -1.61
HOXC9P31274 AC245100.7-201ENST00000609678 442 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AC016597.2-201ENST00000613256 341 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AC008759.3-201ENST00000613300 508 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXC9P31274 AC007342.8-201ENST00000623278 678 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AC004808.1-201ENST00000627671 721 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 ATE1-AS1-202ENST00000636460 506 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AC244258.1-201ENST00000637553 1071 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 AL445984.1-201ENST00000637834 659 ntBASIC4.99□□□□□ -1.61
HOXC9P31274 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HOXC9P31274 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HOXC9P31274 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
HOXC9P31274 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HOXC9P31274 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HOXC9P31274 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms