Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL008729.2-201ENST00000606393 473 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AP005432.2-201ENST00000608162 586 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC013476.2-201ENST00000614456 459 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
COL6A1P12109 AC123768.4-201ENST00000616244 701 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 U4.5-201ENST00000617137 123 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC068724.3-201ENST00000625906 87 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 OR52H1-202ENST00000641796 1061 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 AC100757.1-201ENST00000616872 1835 ntBASIC5.68□□□□□ -1.5
COL6A1P12109 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
COL6A1P12109 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.68□□□□□ -1.5
COL6A1P12109 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.68□□□□□ -1.5
COL6A1P12109 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A1P12109 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A1P12109 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 SAMMSON-226ENST00000642089 1582 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 DHX40P1-201ENST00000588725 1412 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.67□□□□□ -1.5
COL6A1P12109 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL6A1P12109 CR848007.1-201ENST00000442354 1699 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL6A1P12109 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
COL6A1P12109 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
COL6A1P12109 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 OR4G2P-201ENST00000328113 903 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 RN7SKP227-201ENST00000364445 330 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 MIR298-201ENST00000401212 88 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 AL354868.1-201ENST00000417077 482 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AC234782.4-201ENST00000417646 1048 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A1P12109 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC5.67□□□□□ -1.5
COL6A1P12109 AC004448.2-201ENST00000422360 586 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.67□□□□□ -1.5
COL6A1P12109 ZNF863P-201ENST00000426746 417 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AC104651.1-201ENST00000427559 735 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 MTCO1P54-201ENST00000430139 712 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 AC093414.1-201ENST00000434712 514 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 AC241584.1-201ENST00000438469 1241 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 OR7E125P-201ENST00000443450 846 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 EEF1A1P1-201ENST00000447052 739 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 ELOCP23-201ENST00000452014 332 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
COL6A1P12109 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 TPT1P7-201ENST00000458300 517 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 RNA5SP269-201ENST00000459032 137 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
COL6A1P12109 RN7SL817P-201ENST00000480777 288 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 OR4G11P-201ENST00000492842 939 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 MYL12BP2-201ENST00000503948 512 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.67□□□□□ -1.5
COL6A1P12109 AC006499.5-201ENST00000505037 514 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 ARL2BPP4-201ENST00000506854 471 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AC006427.1-201ENST00000514359 712 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 OR4A43P-201ENST00000532938 908 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A1P12109 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 RPS3AP4-201ENST00000555161 764 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 ZNF519P3-201ENST00000557158 1032 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A1P12109 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 AC103792.1-201ENST00000603591 919 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC5.67□□□□□ -1.5
COL6A1P12109 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 AC025048.6-202ENST00000627667 438 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 MIR6830-201ENST00000636015 70 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
COL6A1P12109 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
COL6A1P12109 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.67□□□□□ -1.5
COL6A1P12109 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL6A1P12109 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.67□□□□□ -1.5
COL6A1P12109 TCP11X1-202ENST00000622971 1372 ntBASIC5.67□□□□□ -1.5
COL6A1P12109 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
COL6A1P12109 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 USP9YP4-201ENST00000424401 1745 ntBASIC5.66□□□□□ -1.5
COL6A1P12109 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
COL6A1P12109 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
COL6A1P12109 AC016716.1-201ENST00000265882 708 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms