Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MIR4644-201ENST00000579929 84 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC006116.5-201ENST00000591936 559 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 AL606834.3-201ENST00000602615 496 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC110741.2-201ENST00000605278 268 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC099785.1-201ENST00000605697 437 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC099676.1-201ENST00000608886 657 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD4P09016 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD4P09016 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD4P09016 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD4P09016 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD4P09016 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXD4P09016 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD4P09016 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.88□□□□□ -1.79
HOXD4P09016 AC011155.1-201ENST00000316512 456 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC067945.1-201ENST00000342609 618 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 RNA5SP322-201ENST00000363617 119 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AP002784.2-201ENST00000397300 549 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 RNA5SP306-201ENST00000411087 107 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXD4P09016 AC108032.1-201ENST00000416706 207 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 PTP4A1P7-201ENST00000423476 514 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 COX6CP15-201ENST00000426313 211 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 DEFB130D-201ENST00000426866 237 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC005189.1-201ENST00000431286 310 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD4P09016 BTF3P10-201ENST00000433415 495 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 MTCO1P52-201ENST00000433928 531 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 UBE2V1P3-201ENST00000439651 417 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD4P09016 NDUFS5P3-201ENST00000450668 321 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 DUXAP8-207ENST00000456786 622 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
HOXD4P09016 TPT1P3-201ENST00000492841 512 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AP002812.1-201ENST00000495378 474 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC092045.1-201ENST00000495716 1231 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC008427.1-201ENST00000503102 655 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD4P09016 RN7SKP141-201ENST00000516167 338 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 RNA5SP49-201ENST00000516450 115 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD4P09016 OR5M7P-201ENST00000526140 972 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD4P09016 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD4P09016 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD4P09016 TVP23BP1-201ENST00000557500 617 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD4P09016 AGGF1P6-201ENST00000569213 976 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC006130.2-201ENST00000586202 326 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC012254.4-201ENST00000588843 273 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXD4P09016 AC022916.3-201ENST00000592961 742 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD4P09016 AL031666.3-201ENST00000609320 1006 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD4P09016 DUXAP10-204ENST00000612052 616 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXD4P09016 AP000770.2-201ENST00000623694 100 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC112484.5-201ENST00000624189 228 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD4P09016 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD4P09016 Z73965.1-201ENST00000623412 2297 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD4P09016 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXD4P09016 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD4P09016 MTND4P10-201ENST00000446199 1363 ntBASIC3.88□□□□□ -1.79
HOXD4P09016 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD4P09016 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXD4P09016 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD4P09016 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD4P09016 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD4P09016 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD4P09016 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXD4P09016 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXD4P09016 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD4P09016 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD4P09016 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD4P09016 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD4P09016 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
HOXD4P09016 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXD4P09016 RNU1-63P-201ENST00000383902 164 ntBASIC3.87□□□□□ -1.79
HOXD4P09016 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
HOXD4P09016 RNU6-298P-201ENST00000390888 96 ntBASIC3.87□□□□□ -1.79
HOXD4P09016 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXD4P09016 AC013404.1-201ENST00000413068 249 ntBASIC3.87□□□□□ -1.79
HOXD4P09016 AL450992.3-201ENST00000413192 568 ntBASIC3.87□□□□□ -1.79
HOXD4P09016 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXD4P09016 AC105402.1-201ENST00000413336 545 ntBASIC3.87□□□□□ -1.79
HOXD4P09016 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms