Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHOX2O60902 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHOX2O60902 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHOX2O60902 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.73□□□□□ -1.81
SHOX2O60902 MIR92A2-201ENST00000385299 75 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 U3.22-201ENST00000391120 215 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 OR5BE1P-201ENST00000425977 939 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 B3GNT2P1-201ENST00000434960 952 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.73□□□□□ -1.81
SHOX2O60902 VN1R34P-201ENST00000447387 883 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC3.73□□□□□ -1.81
SHOX2O60902 AC099563.1-201ENST00000456086 418 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 OR9M1P-201ENST00000459641 921 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 AC011276.1-201ENST00000469688 323 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 AC084357.1-201ENST00000473404 255 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC3.73□□□□□ -1.81
SHOX2O60902 AC114967.1-201ENST00000504890 259 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.73□□□□□ -1.81
SHOX2O60902 AC025674.1-201ENST00000507074 324 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 SEC11B-201ENST00000518383 499 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.73□□□□□ -1.81
SHOX2O60902 AC104027.1-201ENST00000521887 300 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.73□□□□□ -1.81
SHOX2O60902 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.73□□□□□ -1.81
SHOX2O60902 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.73□□□□□ -1.81
SHOX2O60902 AC006960.3-201ENST00000561845 705 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 AP000919.1-202ENST00000581139 1264 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.73□□□□□ -1.81
SHOX2O60902 BNIP3P38-201ENST00000601117 544 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 MTCO2P22-201ENST00000603246 681 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 AL160281.1-201ENST00000605307 311 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.73□□□□□ -1.81
SHOX2O60902 CFTRP2-201ENST00000634304 199 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 OR5BE1P-202ENST00000641168 1176 ntBASIC3.73□□□□□ -1.81
SHOX2O60902 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
SHOX2O60902 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SHOX2O60902 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.73□□□□□ -1.81
SHOX2O60902 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.73□□□□□ -1.81
SHOX2O60902 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SHOX2O60902 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
SHOX2O60902 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.73□□□□□ -1.81
SHOX2O60902 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.73□□□□□ -1.81
SHOX2O60902 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHOX2O60902 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.72□□□□□ -1.81
SHOX2O60902 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHOX2O60902 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHOX2O60902 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
SHOX2O60902 MIR208A-201ENST00000362287 71 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 Y_RNA.333-201ENST00000365274 102 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.72□□□□□ -1.81
SHOX2O60902 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.72□□□□□ -1.81
SHOX2O60902 MIR483-201ENST00000385070 76 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 HMGB3P18-201ENST00000406327 590 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 HMGB3P20-201ENST00000417997 600 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
SHOX2O60902 PTP4A1P5-201ENST00000420305 455 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.72□□□□□ -1.81
SHOX2O60902 FTH1P6-201ENST00000430768 320 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC3.72□□□□□ -1.81
SHOX2O60902 BTF3P10-201ENST00000433415 495 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.72□□□□□ -1.81
SHOX2O60902 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.72□□□□□ -1.81
SHOX2O60902 EIF2S2P2-201ENST00000447161 982 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.72□□□□□ -1.81
SHOX2O60902 RPL12P26-201ENST00000452430 487 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 SNRPGP5-201ENST00000456003 220 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC092185.1-201ENST00000491371 97 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC108475.1-201ENST00000507880 950 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 MIR2276-201ENST00000516886 89 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 UBE2NP1-201ENST00000545592 458 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.72□□□□□ -1.81
SHOX2O60902 MIR4277-201ENST00000578298 84 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.72□□□□□ -1.81
SHOX2O60902 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.72□□□□□ -1.81
SHOX2O60902 VN1R84P-201ENST00000593697 235 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.72□□□□□ -1.81
SHOX2O60902 AC024220.1-201ENST00000603675 484 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.72□□□□□ -1.81
SHOX2O60902 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.72□□□□□ -1.81
SHOX2O60902 AC117490.2-201ENST00000610042 594 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC005962.2-201ENST00000611427 652 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AP000843.1-201ENST00000624880 701 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
SHOX2O60902 AC009452.1-201ENST00000640823 606 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 OTUD4P1-201ENST00000237841 3067 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHOX2O60902 AC090229.1-201ENST00000590983 1609 ntBASIC3.72□□□□□ -1.81
SHOX2O60902 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.72□□□□□ -1.81
SHOX2O60902 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.72□□□□□ -1.81
SHOX2O60902 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHOX2O60902 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHOX2O60902 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
SHOX2O60902 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
SHOX2O60902 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
SHOX2O60902 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.71□□□□□ -1.81
SHOX2O60902 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
SHOX2O60902 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.71□□□□□ -1.81
SHOX2O60902 AC004972.1-201ENST00000623934 2209 ntBASIC3.71□□□□□ -1.82
SHOX2O60902 AC087565.3-202ENST00000642085 1603 ntBASIC3.71□□□□□ -1.82
SHOX2O60902 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms