Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 HMGB1P5-201ENST00000255320 642 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS28Q9UK41 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS28Q9UK41 RNU6-839P-201ENST00000363347 108 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AL121978.1-201ENST00000402778 359 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AL121834.1-202ENST00000404494 277 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 RSL24D1P1-201ENST00000404972 493 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC069218.2-201ENST00000411665 344 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 TMSB10P2-201ENST00000416049 131 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC004690.1-201ENST00000418216 328 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 GTF2IP2-201ENST00000424290 697 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AL732292.1-201ENST00000426692 226 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 IFNNP1-201ENST00000429219 553 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 B3GNT2P1-201ENST00000434960 952 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 PPIAP3-201ENST00000450588 505 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 RPL23AP24-201ENST00000458203 385 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 RNA5SP446-201ENST00000515955 82 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 MYL12AP1-201ENST00000518490 515 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC100770.1-201ENST00000532310 322 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC069240.1-201ENST00000548774 375 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC122134.1-202ENST00000569111 1201 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC008759.1-201ENST00000589783 983 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC103792.1-201ENST00000603591 919 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC069431.2-201ENST00000604149 1099 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC144521.1-201ENST00000607148 956 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 OR6R2P-201ENST00000609216 300 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AL023881.1-201ENST00000621088 301 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 AC104985.3-201ENST00000623479 597 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS28Q9UK41 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 NXPH1-205ENST00000602349 1953 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 RNU6-115P-201ENST00000364310 107 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 RNU6-356P-201ENST00000384140 107 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 OFD1P2Y-201ENST00000421895 1149 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 C1DP1-201ENST00000426049 402 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC096632.1-201ENST00000427395 310 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 C4BPAP2-201ENST00000428434 478 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 RPL23AP25-201ENST00000430973 463 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC073143.1-201ENST00000436316 395 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 EIF2S2P2-201ENST00000447161 982 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 RPL29P29-201ENST00000448725 423 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC079203.1-201ENST00000487972 404 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC005726.1-201ENST00000494679 427 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 PRELID3BP6-201ENST00000503839 571 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC096571.1-202ENST00000506634 735 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC093752.1-206ENST00000511823 336 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 RNA5SP497-201ENST00000516081 97 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 SNORA19.3-201ENST00000516165 130 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 OR4C2P-201ENST00000530855 1064 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.57□□□□□ -1.68
VPS28Q9UK41 OR8L1P-201ENST00000534005 955 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS28Q9UK41 AC068831.4-201ENST00000556118 109 ntBASIC4.57□□□□□ -1.68
VPS28Q9UK41 AGGF1P8-201ENST00000562979 1000 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms