Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL360182.1-201ENST00000397433 468 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 RPL31P12-201ENST00000422587 358 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 RPL7AP14-201ENST00000424041 802 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 RPSAP65-201ENST00000429660 595 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 CBX3P6-201ENST00000430257 527 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 CFL1P4-201ENST00000451536 498 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC009963.3-201ENST00000458090 486 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 RN7SL834P-201ENST00000461450 286 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC011476.1-201ENST00000466725 307 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 GM2AP2-201ENST00000491764 562 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC106872.2-201ENST00000494303 480 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 RN7SL101P-201ENST00000496350 279 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC020893.1-201ENST00000502452 580 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC016559.2-201ENST00000510759 359 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AL161670.1-201ENST00000554348 137 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC098657.3-201ENST00000620434 263 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 RAD17P2-201ENST00000451754 1977 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AL589993.1-201ENST00000407450 2524 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 ZNF840P-201ENST00000504759 1996 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AL442639.1-201ENST00000625030 1899 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 MSL3P1-202ENST00000440028 1468 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 RNU1-130P-201ENST00000363930 160 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 RN7SKP69-201ENST00000365390 305 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 RNU6-1293P-201ENST00000384077 107 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 RNU6-1032P-201ENST00000384100 107 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 RNU6-601P-201ENST00000384540 107 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 MRPL42P3-201ENST00000401492 326 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 HMGN1P20-201ENST00000411849 300 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC114482.1-201ENST00000418010 247 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 GSTA6P-201ENST00000424144 582 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 OSTCP4-201ENST00000424397 449 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 Z98949.2-201ENST00000440996 144 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 FHP1-201ENST00000442741 703 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC006967.1-201ENST00000467608 589 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 SNORA25.10-201ENST00000515926 124 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 RNU6-764P-201ENST00000516396 105 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AF038458.1-201ENST00000588406 262 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC023043.2-201ENST00000589678 1026 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC011445.2-201ENST00000599274 173 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 RPSAP75-201ENST00000605848 301 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 RNU6-156P-201ENST00000621869 107 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC011155.2-201ENST00000623202 216 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 AC055839.1-201ENST00000634467 498 ntBASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
LIMD1Q9UGP4 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms