Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL590240.3-201ENST00000621416 943 ntBASIC1.11□□□□□ -2.23
SYNE1Q8NF91 AP001005.3-201ENST00000622049 129 ntBASIC1.11□□□□□ -2.23
SYNE1Q8NF91 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
SYNE1Q8NF91 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
SYNE1Q8NF91 Z83843.1-201ENST00000604070 3685 ntBASIC1.11□□□□□ -2.23
SYNE1Q8NF91 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 CDY11P-201ENST00000447168 1651 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC007823.1-201ENST00000569932 1566 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RNA5SP306-201ENST00000411087 107 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RPS12P5-201ENST00000423449 371 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RBMY1KP-201ENST00000423480 476 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AL591419.1-201ENST00000427423 339 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC011742.1-201ENST00000431448 434 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RBMY2UP-201ENST00000453474 324 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RN7SL585P-201ENST00000470538 280 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC008966.2-201ENST00000606157 453 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC011503.2-201ENST00000594230 1500 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AL606537.1-201ENST00000607258 2011 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 MAPK10-372ENST00000641954 3413 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RNU6ATAC10P-201ENST00000408635 111 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RPS23P10-201ENST00000416185 486 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 U3.44-201ENST00000458938 192 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 MEG8-215ENST00000555354 469 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC090912.3-201ENST00000609775 533 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 MIR1261-201ENST00000408659 82 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 UBE2V1P1-201ENST00000430836 445 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 MAPRE1P3-201ENST00000435438 796 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RPL21P71-201ENST00000465598 459 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 CCDC75P1-201ENST00000469247 791 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 ATP6V1G1P6-201ENST00000504007 334 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC010285.3-201ENST00000511668 676 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 PDCD5P1-201ENST00000543528 309 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 NCAPGP2-201ENST00000557911 754 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AL732618.1-201ENST00000623251 301 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC026422.1-201ENST00000623961 452 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC024341.1-201ENST00000526444 1552 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 MTHFD2P2-201ENST00000407725 247 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC108938.1-201ENST00000451204 136 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RPL21P8-201ENST00000465083 535 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC027287.1-201ENST00000553115 1453 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 SNORD17-201ENST00000390930 237 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC006480.1-201ENST00000449887 378 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC112503.1-201ENST00000608436 391 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 U7.8-201ENST00000619968 63 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC006386.2-201ENST00000624491 75 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC012005.1-201ENST00000624575 75 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC007496.3-201ENST00000624987 3443 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RNA5SP120-201ENST00000410900 112 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 PRELID3BP10-201ENST00000431957 584 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC091862.1-201ENST00000438016 1100 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 AC012158.1-204ENST00000483430 465 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 RN7SKP57-201ENST00000517248 293 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 OR7E13P-201ENST00000526052 910 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
SYNE1Q8NF91 FAM35DP-201ENST00000323387 2712 ntBASIC1.1□□□□□ -2.23
SYNE1Q8NF91 PARD3-204ENST00000374768 799 ntTSL 3 BASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms